Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.8□□□□□ -1.8
SDC1P18827 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.8□□□□□ -1.8
SDC1P18827 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.8□□□□□ -1.8
SDC1P18827 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.8□□□□□ -1.8
SDC1P18827 AC105137.1-201ENST00000484355 562 ntBASIC3.8□□□□□ -1.8
SDC1P18827 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SDC1P18827 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.8□□□□□ -1.8
SDC1P18827 IGLVIV-53-201ENST00000520107 367 ntBASIC3.8□□□□□ -1.8
SDC1P18827 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 SMARCE1P4-201ENST00000523647 241 ntBASIC3.8□□□□□ -1.8
SDC1P18827 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.8□□□□□ -1.8
SDC1P18827 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.8□□□□□ -1.8
SDC1P18827 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.8□□□□□ -1.8
SDC1P18827 RN7SL600P-201ENST00000581811 299 ntBASIC3.8□□□□□ -1.8
SDC1P18827 MIR3138-201ENST00000585238 82 ntBASIC3.8□□□□□ -1.8
SDC1P18827 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.8□□□□□ -1.8
SDC1P18827 AC120053.1-201ENST00000607706 736 ntBASIC3.8□□□□□ -1.8
SDC1P18827 AC006946.3-201ENST00000609791 756 ntBASIC3.8□□□□□ -1.8
SDC1P18827 MIR6868-201ENST00000611215 58 ntBASIC3.8□□□□□ -1.8
SDC1P18827 AP003072.4-201ENST00000624580 310 ntBASIC3.8□□□□□ -1.8
SDC1P18827 AC010608.2-201ENST00000624830 470 ntBASIC3.8□□□□□ -1.8
SDC1P18827 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 ATE1-AS1-202ENST00000636460 506 ntBASIC3.8□□□□□ -1.8
SDC1P18827 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SDC1P18827 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SDC1P18827 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.8□□□□□ -1.8
SDC1P18827 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SDC1P18827 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SDC1P18827 HSPA8P19-201ENST00000505359 1517 ntBASIC3.8□□□□□ -1.8
SDC1P18827 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SDC1P18827 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SDC1P18827 AC074029.4-201ENST00000624796 1859 ntBASIC3.79□□□□□ -1.8
SDC1P18827 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDC1P18827 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDC1P18827 SNORA63.3-201ENST00000362682 132 ntBASIC3.79□□□□□ -1.8
SDC1P18827 RNA5SP27-201ENST00000363839 119 ntBASIC3.79□□□□□ -1.8
SDC1P18827 RNA5SP399-201ENST00000364003 117 ntBASIC3.79□□□□□ -1.8
SDC1P18827 MTATP6P31-201ENST00000406985 692 ntBASIC3.79□□□□□ -1.8
SDC1P18827 RNU2-6P-201ENST00000411404 190 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC1P18827 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC1P18827 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC1P18827 NPM1P34-201ENST00000428821 893 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AF228730.2-201ENST00000438784 848 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AC083863.1-201ENST00000438811 231 ntBASIC3.79□□□□□ -1.8
SDC1P18827 HMGB1P37-201ENST00000439613 609 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AL158053.1-201ENST00000441503 453 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC1P18827 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.79□□□□□ -1.8
SDC1P18827 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC1P18827 RPS11P1-201ENST00000451072 473 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AC092902.1-201ENST00000486999 259 ntBASIC3.79□□□□□ -1.8
SDC1P18827 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC1P18827 AC146944.2-203ENST00000502493 354 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC1P18827 AC139495.1-202ENST00000513164 354 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AP003730.1-201ENST00000524605 285 ntBASIC3.79□□□□□ -1.8
SDC1P18827 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC1P18827 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC1P18827 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SDC1P18827 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.79□□□□□ -1.8
SDC1P18827 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.79□□□□□ -1.8
SDC1P18827 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC1P18827 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.79□□□□□ -1.8
SDC1P18827 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.79□□□□□ -1.8
SDC1P18827 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDC1P18827 AC123768.4-201ENST00000616244 701 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AL445567.2-201ENST00000618935 498 ntBASIC3.79□□□□□ -1.8
SDC1P18827 AC006249.1-201ENST00000621223 471 ntBASIC3.79□□□□□ -1.8
SDC1P18827 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
SDC1P18827 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SDC1P18827 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDC1P18827 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDC1P18827 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SDC1P18827 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDC1P18827 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDC1P18827 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SDC1P18827 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SDC1P18827 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SDC1P18827 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SDC1P18827 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.78□□□□□ -1.8
SDC1P18827 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.78□□□□□ -1.8
SDC1P18827 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SDC1P18827 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SDC1P18827 ZNF603P-201ENST00000405613 487 ntBASIC3.78□□□□□ -1.8
SDC1P18827 RPL7AP73-201ENST00000413490 353 ntBASIC3.78□□□□□ -1.8
SDC1P18827 AC108032.1-201ENST00000416706 207 ntBASIC3.78□□□□□ -1.8
SDC1P18827 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.78□□□□□ -1.8
SDC1P18827 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.78□□□□□ -1.8
SDC1P18827 AC073310.1-201ENST00000423226 1033 ntBASIC3.78□□□□□ -1.8
SDC1P18827 RPL18P10-201ENST00000425606 538 ntBASIC3.78□□□□□ -1.8
SDC1P18827 USP12PY-201ENST00000427677 1064 ntBASIC3.78□□□□□ -1.8
SDC1P18827 AC073069.1-201ENST00000428657 441 ntBASIC3.78□□□□□ -1.8
SDC1P18827 HIGD1AP4-201ENST00000430194 280 ntBASIC3.78□□□□□ -1.8
SDC1P18827 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms