Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.15□□□□□ -2.07
HSPG2P98160 AP001207.2-201ENST00000519490 539 ntBASIC2.15□□□□□ -2.07
HSPG2P98160 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.15□□□□□ -2.07
HSPG2P98160 AC079089.3-201ENST00000603094 673 ntBASIC2.15□□□□□ -2.07
HSPG2P98160 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
HSPG2P98160 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
HSPG2P98160 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
HSPG2P98160 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
HSPG2P98160 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
HSPG2P98160 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
HSPG2P98160 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
HSPG2P98160 AC062016.1-201ENST00000355719 319 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AL357075.1-201ENST00000404107 726 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 U3.39-201ENST00000408569 239 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 RPL6P21-201ENST00000418672 846 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC2.14□□□□□ -2.07
HSPG2P98160 SETP5-201ENST00000437270 562 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 RPL7P36-201ENST00000444633 681 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC2.14□□□□□ -2.07
HSPG2P98160 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC2.14□□□□□ -2.07
HSPG2P98160 AL139395.1-201ENST00000603662 160 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC2.14□□□□□ -2.07
HSPG2P98160 AC100793.4-201ENST00000613683 429 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 AC093849.1-201ENST00000563631 2209 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 HSPD1P11-201ENST00000508643 1702 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 AL031679.1-201ENST00000400616 525 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 RNA5SP229-201ENST00000410809 99 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 BTF3P9-201ENST00000418784 283 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AL139132.1-201ENST00000431587 344 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC2.14□□□□□ -2.07
HSPG2P98160 HMGN2P7-201ENST00000456186 273 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 YWHAEP4-201ENST00000505390 198 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC2.14□□□□□ -2.07
HSPG2P98160 RN7SKP132-201ENST00000516001 208 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 OR13C3-201ENST00000374781 1108 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 AL035404.1-201ENST00000497982 568 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC2.14□□□□□ -2.07
HSPG2P98160 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.14□□□□□ -2.07
HSPG2P98160 RPL23AP92-201ENST00000603609 255 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AC006363.1-201ENST00000603806 463 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
HSPG2P98160 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC2.14□□□□□ -2.07
HSPG2P98160 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 RN7SKP111-201ENST00000410349 271 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.14□□□□□ -2.07
HSPG2P98160 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.14□□□□□ -2.07
HSPG2P98160 MIR4524B-201ENST00000581569 115 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 AC004832.5-201ENST00000608677 401 ntBASIC2.14□□□□□ -2.07
HSPG2P98160 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC2.14□□□□□ -2.07
HSPG2P98160 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC2.14□□□□□ -2.07
HSPG2P98160 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.14□□□□□ -2.07
HSPG2P98160 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
HSPG2P98160 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
HSPG2P98160 AC009313.2-201ENST00000417893 1941 ntBASIC2.13□□□□□ -2.07
HSPG2P98160 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC2.13□□□□□ -2.07
HSPG2P98160 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
HSPG2P98160 AL645568.2-201ENST00000432815 1337 ntBASIC2.13□□□□□ -2.07
HSPG2P98160 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HSPG2P98160 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC2.13□□□□□ -2.07
HSPG2P98160 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC2.13□□□□□ -2.07
HSPG2P98160 UBA52P3-201ENST00000491303 382 ntBASIC2.13□□□□□ -2.07
HSPG2P98160 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.13□□□□□ -2.07
HSPG2P98160 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC2.13□□□□□ -2.07
HSPG2P98160 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms