Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
MSH6P52701 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
MSH6P52701 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.11□□□□□ -1.59
MSH6P52701 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH6P52701 AC233263.6-201ENST00000631132 1963 ntBASIC5.11□□□□□ -1.59
MSH6P52701 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.1□□□□□ -1.59
MSH6P52701 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
MSH6P52701 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
MSH6P52701 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH6P52701 AL121834.1-202ENST00000404494 277 ntBASIC5.1□□□□□ -1.59
MSH6P52701 AL445213.1-201ENST00000412589 747 ntBASIC5.1□□□□□ -1.59
MSH6P52701 FTLP19-201ENST00000433300 394 ntBASIC5.1□□□□□ -1.59
MSH6P52701 AC091862.1-201ENST00000438016 1100 ntBASIC5.1□□□□□ -1.59
MSH6P52701 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC5.1□□□□□ -1.59
MSH6P52701 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.1□□□□□ -1.59
MSH6P52701 AC108941.1-201ENST00000502853 530 ntBASIC5.1□□□□□ -1.59
MSH6P52701 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.1□□□□□ -1.59
MSH6P52701 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC5.1□□□□□ -1.59
MSH6P52701 AC107294.1-201ENST00000609524 467 ntBASIC5.1□□□□□ -1.59
MSH6P52701 AC015813.4-201ENST00000610469 179 ntBASIC5.1□□□□□ -1.59
MSH6P52701 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.1□□□□□ -1.59
MSH6P52701 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSH6P52701 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC5.1□□□□□ -1.59
MSH6P52701 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH6P52701 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSH6P52701 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC5.09□□□□□ -1.59
MSH6P52701 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
MSH6P52701 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSH6P52701 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSH6P52701 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.09□□□□□ -1.59
MSH6P52701 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH6P52701 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH6P52701 AL031121.1-201ENST00000406553 254 ntBASIC5.09□□□□□ -1.59
MSH6P52701 AC245054.1-201ENST00000420944 258 ntBASIC5.09□□□□□ -1.59
MSH6P52701 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.09□□□□□ -1.59
MSH6P52701 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.09□□□□□ -1.59
MSH6P52701 SNORA71B-202ENST00000439232 272 ntBASIC5.09□□□□□ -1.59
MSH6P52701 AC096576.1-201ENST00000489014 359 ntBASIC5.09□□□□□ -1.59
MSH6P52701 PRELID3BP6-201ENST00000503839 571 ntBASIC5.09□□□□□ -1.59
MSH6P52701 AC023141.12-201ENST00000512399 199 ntBASIC5.09□□□□□ -1.59
MSH6P52701 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH6P52701 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC5.09□□□□□ -1.59
MSH6P52701 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH6P52701 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH6P52701 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH6P52701 AC132825.8-201ENST00000640783 297 ntBASIC5.09□□□□□ -1.59
MSH6P52701 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH6P52701 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
MSH6P52701 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
MSH6P52701 AC011266.1-201ENST00000624119 3569 ntBASIC5.09□□□□□ -1.6
MSH6P52701 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC5.09□□□□□ -1.6
MSH6P52701 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.6
MSH6P52701 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH6P52701 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH6P52701 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH6P52701 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH6P52701 ANKRD36P1-201ENST00000344424 659 ntBASIC5.08□□□□□ -1.6
MSH6P52701 BMS1P3-201ENST00000372011 932 ntBASIC5.08□□□□□ -1.6
MSH6P52701 MIR513A2-201ENST00000385249 127 ntBASIC5.08□□□□□ -1.6
MSH6P52701 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH6P52701 COTL1P1-201ENST00000422309 375 ntBASIC5.08□□□□□ -1.6
MSH6P52701 RPS15AP29-201ENST00000445539 400 ntBASIC5.08□□□□□ -1.6
MSH6P52701 RSL24D1P3-201ENST00000449255 495 ntBASIC5.08□□□□□ -1.6
MSH6P52701 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH6P52701 AP001992.1-205ENST00000462248 379 ntBASIC5.08□□□□□ -1.6
MSH6P52701 RPL23AP12-201ENST00000467573 473 ntBASIC5.08□□□□□ -1.6
MSH6P52701 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH6P52701 RPL31P61-201ENST00000496160 376 ntBASIC5.08□□□□□ -1.6
MSH6P52701 RNA5SP208-201ENST00000516156 78 ntBASIC5.08□□□□□ -1.6
MSH6P52701 UBTFL9-201ENST00000534504 1148 ntBASIC5.08□□□□□ -1.6
MSH6P52701 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH6P52701 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC5.08□□□□□ -1.6
MSH6P52701 AC069209.1-201ENST00000619282 651 ntBASIC5.08□□□□□ -1.6
MSH6P52701 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH6P52701 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.08□□□□□ -1.6
MSH6P52701 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH6P52701 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.08□□□□□ -1.6
MSH6P52701 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH6P52701 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH6P52701 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
MSH6P52701 RNA5SP424-201ENST00000390988 115 ntBASIC5.07□□□□□ -1.6
MSH6P52701 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH6P52701 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH6P52701 AC010469.1-201ENST00000463864 576 ntBASIC5.07□□□□□ -1.6
MSH6P52701 RN7SL504P-201ENST00000494496 287 ntBASIC5.07□□□□□ -1.6
MSH6P52701 RNU4ATAC17P-201ENST00000517272 120 ntBASIC5.07□□□□□ -1.6
MSH6P52701 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH6P52701 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC5.07□□□□□ -1.6
MSH6P52701 OR10D4P-201ENST00000525892 951 ntBASIC5.07□□□□□ -1.6
MSH6P52701 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC5.07□□□□□ -1.6
MSH6P52701 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH6P52701 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH6P52701 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH6P52701 AL451007.1-201ENST00000595491 289 ntBASIC5.07□□□□□ -1.6
MSH6P52701 AL606834.2-201ENST00000602954 668 ntBASIC5.07□□□□□ -1.6
MSH6P52701 AC012603.1-201ENST00000606424 528 ntBASIC5.07□□□□□ -1.6
MSH6P52701 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH6P52701 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH6P52701 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSH6P52701 AC005332.5-201ENST00000591222 2919 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms