Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL451142.2-201ENST00000429076 2090 ntBASIC4.34□□□□□ -1.71
MSH3P20585 AC018529.3-201ENST00000624212 2254 ntBASIC4.34□□□□□ -1.72
MSH3P20585 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
MSH3P20585 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
MSH3P20585 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
MSH3P20585 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
MSH3P20585 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.33□□□□□ -1.72
MSH3P20585 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
MSH3P20585 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.33□□□□□ -1.72
MSH3P20585 MIR331-201ENST00000362302 94 ntBASIC4.33□□□□□ -1.72
MSH3P20585 RNA5SP175-201ENST00000364275 119 ntBASIC4.33□□□□□ -1.72
MSH3P20585 RNU6-304P-201ENST00000364855 107 ntBASIC4.33□□□□□ -1.72
MSH3P20585 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
MSH3P20585 U3.22-201ENST00000391120 215 ntBASIC4.33□□□□□ -1.72
MSH3P20585 MCTS2P-201ENST00000394552 546 ntBASIC4.33□□□□□ -1.72
MSH3P20585 VN1R8P-201ENST00000407739 893 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AL160275.2-201ENST00000412010 394 ntBASIC4.33□□□□□ -1.72
MSH3P20585 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.33□□□□□ -1.72
MSH3P20585 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.33□□□□□ -1.72
MSH3P20585 RPL12P34-201ENST00000424532 479 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AC092648.1-201ENST00000425870 423 ntBASIC4.33□□□□□ -1.72
MSH3P20585 RPS26P47-201ENST00000427219 348 ntBASIC4.33□□□□□ -1.72
MSH3P20585 GTF2IP3-201ENST00000433887 494 ntBASIC4.33□□□□□ -1.72
MSH3P20585 USP9YP24-201ENST00000434374 697 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.33□□□□□ -1.72
MSH3P20585 PTGES3P1-201ENST00000439531 483 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AC069285.2-201ENST00000440210 275 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.33□□□□□ -1.72
MSH3P20585 USP9YP17-201ENST00000444617 696 ntBASIC4.33□□□□□ -1.72
MSH3P20585 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.33□□□□□ -1.72
MSH3P20585 AL162388.1-201ENST00000450912 352 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 RPL35AP15-201ENST00000468042 339 ntBASIC4.33□□□□□ -1.72
MSH3P20585 RN7SL481P-201ENST00000477764 299 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.33□□□□□ -1.72
MSH3P20585 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.33□□□□□ -1.72
MSH3P20585 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 OR5BC1P-201ENST00000529327 739 ntBASIC4.33□□□□□ -1.72
MSH3P20585 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.33□□□□□ -1.72
MSH3P20585 AC006518.2-201ENST00000542513 940 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AC025260.1-201ENST00000548858 430 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AC027104.1-201ENST00000563702 681 ntBASIC4.33□□□□□ -1.72
MSH3P20585 MIR4284-201ENST00000578924 81 ntBASIC4.33□□□□□ -1.72
MSH3P20585 MIR548Y-201ENST00000582739 110 ntBASIC4.33□□□□□ -1.72
MSH3P20585 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 AC123786.2-201ENST00000603459 275 ntBASIC4.33□□□□□ -1.72
MSH3P20585 AC013468.1-201ENST00000608680 598 ntBASIC4.33□□□□□ -1.72
MSH3P20585 uc_338.9-201ENST00000617424 182 ntBASIC4.33□□□□□ -1.72
MSH3P20585 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 NOL8P1-201ENST00000508336 3529 ntBASIC4.33□□□□□ -1.72
MSH3P20585 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
MSH3P20585 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 AP000756.2-201ENST00000624168 2567 ntBASIC4.33□□□□□ -1.72
MSH3P20585 MAPK10-304ENST00000641341 3984 ntBASIC4.33□□□□□ -1.72
MSH3P20585 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSH3P20585 AC093311.1-201ENST00000506586 2021 ntBASIC4.33□□□□□ -1.72
MSH3P20585 PHKBP1-201ENST00000450951 1951 ntBASIC4.33□□□□□ -1.72
MSH3P20585 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.32□□□□□ -1.72
MSH3P20585 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.32□□□□□ -1.72
MSH3P20585 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.32□□□□□ -1.72
MSH3P20585 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.32□□□□□ -1.72
MSH3P20585 SNORA11F-201ENST00000408237 128 ntBASIC4.32□□□□□ -1.72
MSH3P20585 GSTM3P2-201ENST00000412746 530 ntBASIC4.32□□□□□ -1.72
MSH3P20585 RPL6P29-201ENST00000414863 865 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AL807761.1-201ENST00000417622 171 ntBASIC4.32□□□□□ -1.72
MSH3P20585 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.32□□□□□ -1.72
MSH3P20585 AC246680.2-201ENST00000422106 389 ntBASIC4.32□□□□□ -1.72
MSH3P20585 RPS29P17-201ENST00000430795 166 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AL353597.2-202ENST00000434901 373 ntBASIC4.32□□□□□ -1.72
MSH3P20585 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.32□□□□□ -1.72
MSH3P20585 ARL5AP2-201ENST00000444698 533 ntBASIC4.32□□□□□ -1.72
MSH3P20585 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.32□□□□□ -1.72
MSH3P20585 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.32□□□□□ -1.72
MSH3P20585 AC005229.2-201ENST00000456995 399 ntBASIC4.32□□□□□ -1.72
MSH3P20585 RNU6-1218P-201ENST00000458990 108 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC010469.1-201ENST00000463864 576 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC011276.1-201ENST00000469688 323 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms