Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RHOT1P2-201ENST00000366423 333 ntBASIC4.59□□□□□ -1.67
COL18A1P39060 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.59□□□□□ -1.67
COL18A1P39060 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.59□□□□□ -1.67
COL18A1P39060 AC037198.2-201ENST00000478845 733 ntBASIC4.59□□□□□ -1.67
COL18A1P39060 TMED11P-201ENST00000479478 690 ntBASIC4.59□□□□□ -1.67
COL18A1P39060 RPL7P38-201ENST00000488396 739 ntBASIC4.59□□□□□ -1.67
COL18A1P39060 RNA5SP341-201ENST00000516261 117 ntBASIC4.59□□□□□ -1.67
COL18A1P39060 Vault.1-201ENST00000516474 102 ntBASIC4.59□□□□□ -1.67
COL18A1P39060 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.59□□□□□ -1.67
COL18A1P39060 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.59□□□□□ -1.67
COL18A1P39060 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL18A1P39060 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL18A1P39060 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL18A1P39060 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL18A1P39060 NCOA4P2-201ENST00000340589 1813 ntBASIC4.59□□□□□ -1.68
COL18A1P39060 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
COL18A1P39060 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
COL18A1P39060 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
COL18A1P39060 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
COL18A1P39060 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL18A1P39060 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL18A1P39060 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL18A1P39060 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL18A1P39060 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.58□□□□□ -1.68
COL18A1P39060 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL18A1P39060 OR1AA1P-201ENST00000419597 916 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.58□□□□□ -1.68
COL18A1P39060 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.58□□□□□ -1.68
COL18A1P39060 AC092809.1-201ENST00000441469 474 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.58□□□□□ -1.68
COL18A1P39060 AC097262.1-201ENST00000452559 548 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 AC096576.1-201ENST00000489014 359 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 RPL5P23-201ENST00000496040 868 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 STMN1P2-201ENST00000508435 439 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 RNU6ATAC39P-201ENST00000516309 149 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.58□□□□□ -1.68
COL18A1P39060 AC073657.2-201ENST00000605661 303 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL18A1P39060 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL18A1P39060 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL18A1P39060 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.58□□□□□ -1.68
COL18A1P39060 AC119744.1-201ENST00000454746 1715 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.58□□□□□ -1.68
COL18A1P39060 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL18A1P39060 U3.19-201ENST00000390893 196 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 RNU6-316P-201ENST00000391027 107 ntBASIC4.58□□□□□ -1.68
COL18A1P39060 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL18A1P39060 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.58□□□□□ -1.68
COL18A1P39060 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.58□□□□□ -1.68
COL18A1P39060 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
COL18A1P39060 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.57□□□□□ -1.68
COL18A1P39060 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.57□□□□□ -1.68
COL18A1P39060 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL18A1P39060 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL18A1P39060 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL18A1P39060 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.57□□□□□ -1.68
COL18A1P39060 RN7SKP199-201ENST00000410325 305 ntBASIC4.57□□□□□ -1.68
COL18A1P39060 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL18A1P39060 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.57□□□□□ -1.68
COL18A1P39060 SULT1C2P2-201ENST00000562517 294 ntBASIC4.57□□□□□ -1.68
COL18A1P39060 AC006539.2-201ENST00000601729 572 ntBASIC4.57□□□□□ -1.68
COL18A1P39060 AC022149.2-201ENST00000621061 203 ntBASIC4.57□□□□□ -1.68
COL18A1P39060 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.57□□□□□ -1.68
COL18A1P39060 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.57□□□□□ -1.68
COL18A1P39060 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
COL18A1P39060 AC010266.2-201ENST00000564741 3255 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 TCP1P3-201ENST00000414406 1498 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
COL18A1P39060 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.56□□□□□ -1.68
COL18A1P39060 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.56□□□□□ -1.68
COL18A1P39060 YWHAQP9-201ENST00000445891 512 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 SEPT14P1-201ENST00000458703 648 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.56□□□□□ -1.68
COL18A1P39060 AC011825.1-201ENST00000484967 388 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 IGHV3-63-201ENST00000518422 341 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 AC008489.1-201ENST00000524271 483 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 AL133457.1-201ENST00000564251 987 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL18A1P39060 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL18A1P39060 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL18A1P39060 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL18A1P39060 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL18A1P39060 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL18A1P39060 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL18A1P39060 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL18A1P39060 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.56□□□□□ -1.68
COL18A1P39060 AL078595.2-201ENST00000605309 1780 ntBASIC4.56□□□□□ -1.68
COL18A1P39060 BX119904.1-201ENST00000432026 348 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.55□□□□□ -1.68
COL18A1P39060 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.55□□□□□ -1.68
COL18A1P39060 AP001992.1-205ENST00000462248 379 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 RN7SL594P-201ENST00000470590 287 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.55□□□□□ -1.68
COL18A1P39060 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.55□□□□□ -1.68
COL18A1P39060 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.55□□□□□ -1.68
COL18A1P39060 EIF1P6-201ENST00000600054 334 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 AC105227.2-201ENST00000615075 605 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 AC006386.2-201ENST00000624491 75 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 AC012005.1-201ENST00000624575 75 ntBASIC4.55□□□□□ -1.68
COL18A1P39060 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms