Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC092266.1-201ENST00000610958 165 ntBASIC5.13□□□□□ -1.59
MSX2P35548 Y_RNA.804-201ENST00000615262 101 ntBASIC5.13□□□□□ -1.59
MSX2P35548 uc_338.31-201ENST00000615595 186 ntBASIC5.13□□□□□ -1.59
MSX2P35548 uc_338.9-201ENST00000617424 182 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC245014.3-201ENST00000618589 347 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 AP005264.7-201ENST00000625003 745 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC111152.1-202ENST00000635848 339 ntBASIC5.13□□□□□ -1.59
MSX2P35548 MIR1910-201ENST00000636955 80 ntBASIC5.13□□□□□ -1.59
MSX2P35548 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 AC083843.2-201ENST00000568248 6253 ntBASIC5.13□□□□□ -1.59
MSX2P35548 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.13□□□□□ -1.59
MSX2P35548 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.13□□□□□ -1.59
MSX2P35548 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.13□□□□□ -1.59
MSX2P35548 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 AC104623.2-202ENST00000623477 4002 ntBASIC5.13□□□□□ -1.59
MSX2P35548 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.12□□□□□ -1.59
MSX2P35548 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.12□□□□□ -1.59
MSX2P35548 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 AC025574.1-201ENST00000554784 1653 ntBASIC5.12□□□□□ -1.59
MSX2P35548 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.12□□□□□ -1.59
MSX2P35548 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX2P35548 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX2P35548 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX2P35548 TMSB4XP4-201ENST00000323496 618 ntBASIC5.12□□□□□ -1.59
MSX2P35548 RNU6-181P-201ENST00000363225 107 ntBASIC5.12□□□□□ -1.59
MSX2P35548 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
MSX2P35548 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
MSX2P35548 RPL23AP29-201ENST00000397284 453 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AL590002.1-201ENST00000406554 418 ntBASIC5.12□□□□□ -1.59
MSX2P35548 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX2P35548 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX2P35548 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX2P35548 MTND1P14-201ENST00000427400 950 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC5.12□□□□□ -1.59
MSX2P35548 HMGB3P24-201ENST00000433260 622 ntBASIC5.12□□□□□ -1.59
MSX2P35548 RPL21P110-201ENST00000433345 446 ntBASIC5.12□□□□□ -1.59
MSX2P35548 PNKDP1-201ENST00000435914 430 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX2P35548 AC004865.1-201ENST00000442276 1003 ntBASIC5.12□□□□□ -1.59
MSX2P35548 RPL5P7-201ENST00000444235 813 ntBASIC5.12□□□□□ -1.59
MSX2P35548 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX2P35548 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.12□□□□□ -1.59
MSX2P35548 RPL31P44-201ENST00000447680 377 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AC108161.1-201ENST00000461060 402 ntBASIC5.12□□□□□ -1.59
MSX2P35548 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.12□□□□□ -1.59
MSX2P35548 AL122020.1-201ENST00000472287 459 ntBASIC5.12□□□□□ -1.59
MSX2P35548 RPS17P15-201ENST00000475609 349 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AP000797.2-201ENST00000475768 606 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.12□□□□□ -1.59
MSX2P35548 AC069439.1-201ENST00000494739 167 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.12□□□□□ -1.59
MSX2P35548 AC108078.3-201ENST00000502633 489 ntBASIC5.12□□□□□ -1.59
MSX2P35548 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC5.12□□□□□ -1.59
MSX2P35548 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX2P35548 AC093824.1-201ENST00000508796 343 ntBASIC5.12□□□□□ -1.59
MSX2P35548 MTCYBP43-201ENST00000513621 740 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX2P35548 SNORA20.3-201ENST00000516880 132 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AP006245.2-201ENST00000522004 300 ntBASIC5.12□□□□□ -1.59
MSX2P35548 OR5BC1P-201ENST00000529327 739 ntBASIC5.12□□□□□ -1.59
MSX2P35548 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
MSX2P35548 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.12□□□□□ -1.59
MSX2P35548 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX2P35548 OR1E3-201ENST00000575608 948 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AC022884.2-201ENST00000578535 580 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX2P35548 AC005730.3-201ENST00000583067 366 ntBASIC5.12□□□□□ -1.59
MSX2P35548 VN1R79P-201ENST00000593540 513 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AP000907.4-201ENST00000604143 237 ntBASIC5.12□□□□□ -1.59
MSX2P35548 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC5.12□□□□□ -1.59
MSX2P35548 AC005332.6-201ENST00000613178 446 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AC104260.1-201ENST00000616660 539 ntBASIC5.12□□□□□ -1.59
MSX2P35548 AL121890.2-201ENST00000617644 465 ntBASIC5.12□□□□□ -1.59
MSX2P35548 MKKS-204ENST00000639674 192 ntBASIC5.12□□□□□ -1.59
MSX2P35548 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
MSX2P35548 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 IFIT1P1-201ENST00000400497 1449 ntBASIC5.12□□□□□ -1.59
MSX2P35548 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
MSX2P35548 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX2P35548 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX2P35548 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
MSX2P35548 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms