Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SCN4AP35499 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 AC005332.5-201ENST00000591222 2919 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 MFSD8-236ENST00000641509 4050 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
SCN4AP35499 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
SCN4AP35499 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 SNORD17-201ENST00000390930 237 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 DBIP2-201ENST00000419076 262 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 RNF19BPX-201ENST00000426224 625 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 UBE2V1P1-201ENST00000430836 445 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 ELOCP8-201ENST00000439309 332 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 ELOCP15-201ENST00000442090 332 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 NANOGNBP1-201ENST00000448444 480 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 AL121877.1-201ENST00000453704 622 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
SCN4AP35499 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.38□□□□□ -1.71
SCN4AP35499 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 MIR5680-201ENST00000577577 84 ntBASIC4.38□□□□□ -1.71
SCN4AP35499 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.38□□□□□ -1.71
SCN4AP35499 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.38□□□□□ -1.71
SCN4AP35499 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.38□□□□□ -1.71
SCN4AP35499 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SCN4AP35499 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
SCN4AP35499 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.38□□□□□ -1.71
SCN4AP35499 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SCN4AP35499 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SCN4AP35499 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SCN4AP35499 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SCN4AP35499 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SCN4AP35499 AC007685.1-201ENST00000329806 452 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SCN4AP35499 GCNT6-201ENST00000379591 934 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 RN7SKP284-201ENST00000411002 343 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 RN7SKP247-201ENST00000411094 308 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.37□□□□□ -1.71
SCN4AP35499 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SCN4AP35499 NPM1P25-201ENST00000429734 854 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.37□□□□□ -1.71
SCN4AP35499 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.37□□□□□ -1.71
SCN4AP35499 RPL21P8-201ENST00000465083 535 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.37□□□□□ -1.71
SCN4AP35499 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.37□□□□□ -1.71
SCN4AP35499 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.37□□□□□ -1.71
SCN4AP35499 AC006116.10-201ENST00000591836 581 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 OR7A8P-201ENST00000595427 913 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 AC069209.1-201ENST00000619282 651 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SCN4AP35499 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
SCN4AP35499 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SCN4AP35499 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SCN4AP35499 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SCN4AP35499 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SCN4AP35499 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SCN4AP35499 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.37□□□□□ -1.71
SCN4AP35499 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SCN4AP35499 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
SCN4AP35499 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.37□□□□□ -1.71
SCN4AP35499 AC017078.1-201ENST00000416146 368 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.37□□□□□ -1.71
SCN4AP35499 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.37□□□□□ -1.71
SCN4AP35499 AC084198.1-201ENST00000477747 402 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 AC096576.1-201ENST00000489014 359 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 HMGB3P13-201ENST00000511263 607 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 AC034105.3-201ENST00000565294 442 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.37□□□□□ -1.71
SCN4AP35499 MIR4727-201ENST00000622232 55 ntBASIC4.37□□□□□ -1.71
SCN4AP35499 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.37□□□□□ -1.71
SCN4AP35499 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.37□□□□□ -1.71
SCN4AP35499 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
SCN4AP35499 SCN1A-220ENST00000641603 12506 ntBASIC4.36□□□□□ -1.71
SCN4AP35499 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.36□□□□□ -1.71
SCN4AP35499 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SCN4AP35499 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SCN4AP35499 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 RNA5SP432-201ENST00000362480 116 ntBASIC4.36□□□□□ -1.71
SCN4AP35499 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.36□□□□□ -1.71
SCN4AP35499 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.36□□□□□ -1.71
SCN4AP35499 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.36□□□□□ -1.71
SCN4AP35499 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.36□□□□□ -1.71
SCN4AP35499 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.36□□□□□ -1.71
SCN4AP35499 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.36□□□□□ -1.71
SCN4AP35499 LARP7P3-201ENST00000579888 337 ntBASIC4.36□□□□□ -1.71
SCN4AP35499 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.36□□□□□ -1.71
SCN4AP35499 RMST_9.1-201ENST00000619945 193 ntBASIC4.36□□□□□ -1.71
SCN4AP35499 AC095038.2-201ENST00000621464 1070 ntBASIC4.36□□□□□ -1.71
SCN4AP35499 AC103858.2-201ENST00000621471 543 ntBASIC4.36□□□□□ -1.71
SCN4AP35499 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.36□□□□□ -1.71
SCN4AP35499 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms