Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL6A3P12111 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
COL6A3P12111 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
COL6A3P12111 RPS26P4-201ENST00000431743 355 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.6□□□□□ -1.83
COL6A3P12111 AC092868.3-201ENST00000560515 784 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 ATP5F1P7-201ENST00000567330 760 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 AP003122.5-201ENST00000527668 3766 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 OR51C1P-202ENST00000641159 1444 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC3.6□□□□□ -1.83
COL6A3P12111 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL6A3P12111 AL121839.2-201ENST00000565058 6943 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
COL6A3P12111 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
COL6A3P12111 MIR764-201ENST00000390811 85 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 AC124916.1-201ENST00000444020 547 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 AC245517.4-201ENST00000448601 281 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.59□□□□□ -1.83
COL6A3P12111 AC026782.2-201ENST00000510845 636 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 OR4C2P-201ENST00000530855 1064 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 MIR4472-2-201ENST00000582069 67 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.59□□□□□ -1.83
COL6A3P12111 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.59□□□□□ -1.83
COL6A3P12111 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
COL6A3P12111 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.59□□□□□ -1.83
COL6A3P12111 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 RNA5SP424-201ENST00000390988 115 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.59□□□□□ -1.83
COL6A3P12111 AC005229.2-201ENST00000456995 399 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 RPL36AP21-201ENST00000490372 323 ntBASIC3.59□□□□□ -1.83
COL6A3P12111 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A3P12111 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL6A3P12111 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.59□□□□□ -1.84
COL6A3P12111 RN7SKP53-201ENST00000411337 315 ntBASIC3.59□□□□□ -1.84
COL6A3P12111 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.59□□□□□ -1.84
COL6A3P12111 AL357552.1-201ENST00000445254 415 ntBASIC3.59□□□□□ -1.84
COL6A3P12111 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
COL6A3P12111 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC3.59□□□□□ -1.84
COL6A3P12111 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.59□□□□□ -1.84
COL6A3P12111 ELOCP29-201ENST00000588193 334 ntBASIC3.59□□□□□ -1.84
COL6A3P12111 AC067852.3-201ENST00000589177 561 ntBASIC3.59□□□□□ -1.84
COL6A3P12111 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
COL6A3P12111 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL6A3P12111 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL6A3P12111 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.59□□□□□ -1.84
COL6A3P12111 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
COL6A3P12111 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A3P12111 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
COL6A3P12111 RN7SKP111-201ENST00000410349 271 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 AC063979.1-201ENST00000415539 377 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.58□□□□□ -1.84
COL6A3P12111 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A3P12111 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC3.58□□□□□ -1.84
COL6A3P12111 RPS27AP15-201ENST00000447672 466 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.58□□□□□ -1.84
COL6A3P12111 AL139174.1-201ENST00000531489 886 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 AADACP1-206ENST00000561502 1193 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 AC006363.1-201ENST00000603806 463 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 AL359535.1-201ENST00000612100 1087 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A3P12111 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A3P12111 U3.12-201ENST00000364498 214 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 RPS29P21-201ENST00000496272 170 ntBASIC3.58□□□□□ -1.84
COL6A3P12111 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.58□□□□□ -1.84
COL6A3P12111 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC3.58□□□□□ -1.84
COL6A3P12111 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A3P12111 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
COL6A3P12111 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A3P12111 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
COL6A3P12111 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC3.57□□□□□ -1.84
COL6A3P12111 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
COL6A3P12111 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 RPL35AP12-201ENST00000425362 338 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC3.57□□□□□ -1.84
COL6A3P12111 HMGB1P3-201ENST00000502802 616 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AC090151.1-201ENST00000520784 730 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.57□□□□□ -1.84
COL6A3P12111 OR11H5P-201ENST00000554039 926 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.57□□□□□ -1.84
COL6A3P12111 HMGB1P6-201ENST00000569046 646 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.57□□□□□ -1.84
COL6A3P12111 CYCSP41-201ENST00000616920 296 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC3.57□□□□□ -1.84
COL6A3P12111 AC099063.3-201ENST00000642066 185 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 AC090971.4-201ENST00000560291 1800 ntBASIC3.57□□□□□ -1.84
COL6A3P12111 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A3P12111 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.57□□□□□ -1.84
COL6A3P12111 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.57□□□□□ -1.84
COL6A3P12111 NPM1P28-201ENST00000492269 840 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms