Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC109486.1-201ENST00000486833 374 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 AC011005.3-201ENST00000491624 395 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC104108.1-201ENST00000509930 412 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 AC079395.1-201ENST00000510981 262 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 FTH1P11-201ENST00000517577 551 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A1P12109 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC5.77□□□□□ -1.49
COL6A1P12109 AL590392.1-201ENST00000604960 446 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 AL391497.1-201ENST00000608671 547 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 PCMTD1P7-201ENST00000634506 357 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 AL353743.4-201ENST00000422653 1547 ntBASIC5.77□□□□□ -1.49
COL6A1P12109 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.77□□□□□ -1.49
COL6A1P12109 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL6A1P12109 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A1P12109 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL6A1P12109 RNU6-500P-201ENST00000362349 107 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 Y_RNA.126-201ENST00000363382 111 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 RNU6-707P-201ENST00000364647 95 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 RNA5SP90-201ENST00000364801 99 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL6A1P12109 HSPD1P16-201ENST00000402302 394 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 RN7SKP27-201ENST00000410684 333 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 RN7SKP100-201ENST00000411258 284 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC069213.2-201ENST00000420238 366 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AL358176.3-201ENST00000420757 454 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 RBMX2P4-201ENST00000441256 376 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC5.76□□□□□ -1.49
COL6A1P12109 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC5.76□□□□□ -1.49
COL6A1P12109 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A1P12109 snoU13.29-201ENST00000459370 104 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC147055.4-201ENST00000504399 745 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A1P12109 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A1P12109 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.76□□□□□ -1.49
COL6A1P12109 RN7SKP21-201ENST00000516503 220 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 RNA5SP43-201ENST00000516559 110 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.76□□□□□ -1.49
COL6A1P12109 AP002812.4-201ENST00000532139 286 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC025260.1-201ENST00000548858 430 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A1P12109 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.76□□□□□ -1.49
COL6A1P12109 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.76□□□□□ -1.49
COL6A1P12109 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC5.76□□□□□ -1.49
COL6A1P12109 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC5.76□□□□□ -1.49
COL6A1P12109 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 AC090312.1-201ENST00000580637 348 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 MIR548S-201ENST00000581352 82 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC110743.1-201ENST00000584870 478 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 NDUFA8P1-201ENST00000605525 367 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC069545.1-201ENST00000605671 358 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC092354.1-201ENST00000606057 376 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC090948.2-201ENST00000607363 564 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AC243654.2-201ENST00000612843 443 ntBASIC5.76□□□□□ -1.49
COL6A1P12109 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A1P12109 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
COL6A1P12109 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL6A1P12109 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A1P12109 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
COL6A1P12109 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A1P12109 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC092681.1-201ENST00000297369 291 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 METTL21EP-201ENST00000298105 713 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms