Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 UBE2V1P1-201ENST00000430836 445 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC073587.1-201ENST00000447093 876 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 ISCUP1-201ENST00000454451 448 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 RPL7AP28-201ENST00000464513 571 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 RPL23AP65-201ENST00000475608 468 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 RPS4XP18-201ENST00000495480 763 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 MTND2P26-201ENST00000528255 1029 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC087897.1-201ENST00000550134 156 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 EIF5A2P1-201ENST00000564027 460 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC022069.1-201ENST00000582910 658 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 MIR4715-201ENST00000584117 79 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 RPL12P25-202ENST00000598100 674 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AL020997.3-201ENST00000602843 359 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 Z82195.1-201ENST00000604558 398 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC099669.2-201ENST00000616549 437 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC022306.3-201ENST00000619930 550 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AP005019.3-201ENST00000620418 560 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 MIR7641-1-201ENST00000627518 61 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS28Q9UK41 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS28Q9UK41 DCAF13P3-201ENST00000561147 1334 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS28Q9UK41 AL672167.1-205ENST00000641112 3080 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VPS28Q9UK41 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS28Q9UK41 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 AL355852.1-201ENST00000454081 1771 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS28Q9UK41 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 OR52B1P-201ENST00000316506 909 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 RNU1-32P-201ENST00000363937 159 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 RNU6-444P-201ENST00000383988 108 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 RNU6-298P-201ENST00000390888 96 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 HDGFP1-201ENST00000405943 252 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC016397.1-201ENST00000412463 242 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC008280.1-201ENST00000418851 412 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 TCEA1P2-201ENST00000420496 906 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 USP9YP21-201ENST00000420603 432 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 SFR1P2-201ENST00000421841 730 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 RPEP3-201ENST00000425462 676 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 RPS12P10-201ENST00000427031 377 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC010881.1-201ENST00000433830 235 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 RPS26P56-201ENST00000444468 240 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 RPL37P6-202ENST00000464216 403 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 MTATP6P9-201ENST00000515039 680 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 OR8I1P-201ENST00000529291 931 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC118942.1-201ENST00000529674 1035 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 HIGD1AP5-201ENST00000529959 259 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS28Q9UK41 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 AP001180.3-201ENST00000582221 145 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 SLC25A36P1-201ENST00000590111 465 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC233280.2-201ENST00000603917 1070 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AL158050.2-201ENST00000605336 568 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC026979.4-201ENST00000606555 645 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC092953.2-201ENST00000608000 699 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS28Q9UK41 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS28Q9UK41 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS28Q9UK41 AC139713.2-215ENST00000641428 5037 ntBASIC4.68□□□□□ -1.66
VPS28Q9UK41 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS28Q9UK41 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS28Q9UK41 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC105074.1-201ENST00000623380 3095 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC017104.4-201ENST00000636283 1592 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 SDHCP2-201ENST00000398565 501 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms