Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 RPL21P65-201ENST00000406094 466 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 EIF1P3-201ENST00000423841 334 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 CDY14P-201ENST00000431260 1014 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 CDY12P-201ENST00000440679 1015 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 CDY13P-201ENST00000445813 1015 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 CDY23P-201ENST00000451661 1014 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 RN7SL542P-201ENST00000467147 294 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 AC104687.1-201ENST00000485829 412 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 AC110792.2-201ENST00000510278 224 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 HNRNPKP5-201ENST00000515300 253 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 Vault.1-201ENST00000516474 102 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 RNA5SP73-201ENST00000516744 108 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 CBX3P5-201ENST00000552017 521 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 POLR2KP1-201ENST00000553226 168 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 AC069304.3-201ENST00000603938 1084 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 AC007546.1-201ENST00000619452 559 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 AC010608.2-201ENST00000624830 470 ntBASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
TM9SF3Q9HD45 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RLIMP1-201ENST00000339626 1680 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 DCAF13P1-201ENST00000495256 1330 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 GTF2H2B-203ENST00000508065 1432 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RNU1-15P-201ENST00000353977 144 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RNA5SP307-201ENST00000362863 116 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RNA5SP167-201ENST00000365461 116 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 MIR554-201ENST00000384874 96 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 ENSAP1-201ENST00000392855 326 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 SNORA74C-2-201ENST00000411179 201 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC004987.3-201ENST00000413879 771 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AL512504.1-201ENST00000415494 778 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RPL7P53-201ENST00000421245 739 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 USP9YP7-201ENST00000436723 430 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 USP9YP32-201ENST00000452432 430 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RPL23AP81-201ENST00000455252 467 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 HMGB3P30-201ENST00000457863 606 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC087385.1-201ENST00000475062 312 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 TPT1P3-201ENST00000492841 512 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 SNORA67.7-201ENST00000516664 135 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RNU1-45P-201ENST00000517191 141 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 RFPL1S-203ENST00000539579 330 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC053481.4-201ENST00000583164 216 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 MIR3158-1-201ENST00000583596 81 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AL392112.1-201ENST00000605115 829 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 BNIP3P7-201ENST00000605641 516 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC073111.2-201ENST00000605657 1075 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 Z98200.1-201ENST00000607298 470 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC006133.1-201ENST00000617106 264 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC007546.2-201ENST00000623996 360 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC017007.4-201ENST00000503353 1352 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC097504.1-201ENST00000515103 2415 ntBASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TM9SF3Q9HD45 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
TM9SF3Q9HD45 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
TM9SF3Q9HD45 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms