Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AL034370.1-201ENST00000397254 1590 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
HPS3Q969F9 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HPS3Q969F9 SUGT1P1-201ENST00000379514 476 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HPS3Q969F9 ATP5F1P3-201ENST00000397213 657 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 PRRC2CP1-201ENST00000404428 159 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 RN7SKP216-201ENST00000411050 312 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC098592.1-201ENST00000419352 333 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AL645608.4-201ENST00000423619 154 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC5.38□□□□□ -1.55
HPS3Q969F9 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.38□□□□□ -1.55
HPS3Q969F9 RN7SL517P-201ENST00000462240 305 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 ACTG1P13-201ENST00000486987 1043 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC021146.8-201ENST00000507455 733 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC5.38□□□□□ -1.55
HPS3Q969F9 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AP000676.2-201ENST00000529711 301 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 OR5D15P-201ENST00000531671 942 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC020910.3-201ENST00000603701 874 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC121247.2-201ENST00000604776 136 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.38□□□□□ -1.55
HPS3Q969F9 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC100847.1-201ENST00000611316 481 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC009318.3-201ENST00000616916 503 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC090510.2-201ENST00000617465 629 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC073348.1-201ENST00000623002 331 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AL359757.1-201ENST00000623176 255 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.38□□□□□ -1.55
HPS3Q969F9 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HPS3Q969F9 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.38□□□□□ -1.55
HPS3Q969F9 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.38□□□□□ -1.55
HPS3Q969F9 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.38□□□□□ -1.55
HPS3Q969F9 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC131971.1-201ENST00000332881 1482 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HPS3Q969F9 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HPS3Q969F9 AC104118.1-201ENST00000607625 1589 ntBASIC5.38□□□□□ -1.55
HPS3Q969F9 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HPS3Q969F9 AC025574.1-201ENST00000554784 1653 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.37□□□□□ -1.55
HPS3Q969F9 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HPS3Q969F9 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HPS3Q969F9 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
HPS3Q969F9 AC016716.1-201ENST00000265882 708 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 RNA5SP191-201ENST00000362585 102 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.37□□□□□ -1.55
HPS3Q969F9 MIR550A3-201ENST00000390735 95 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 SKINT1L-201ENST00000401057 817 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AL590084.2-201ENST00000401481 382 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AL139128.1-201ENST00000413921 941 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.37□□□□□ -1.55
HPS3Q969F9 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.37□□□□□ -1.55
HPS3Q969F9 TMBIM7P-201ENST00000418074 855 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 BOLA3P4-201ENST00000418151 400 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AC011233.1-201ENST00000422812 283 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AL031736.2-201ENST00000426573 787 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 OR2B7P-201ENST00000429302 934 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AC092162.1-201ENST00000432828 434 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 VN1R54P-201ENST00000435210 1049 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AC112498.1-201ENST00000444401 332 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.37□□□□□ -1.55
HPS3Q969F9 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.37□□□□□ -1.55
HPS3Q969F9 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC5.37□□□□□ -1.55
HPS3Q969F9 HMGN3P1-201ENST00000453847 193 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.37□□□□□ -1.55
HPS3Q969F9 GYG1P1-201ENST00000460864 698 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 PPIAP21-201ENST00000464473 501 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AC126121.1-201ENST00000482313 553 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.37□□□□□ -1.55
HPS3Q969F9 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.37□□□□□ -1.55
HPS3Q969F9 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.37□□□□□ -1.55
HPS3Q969F9 HMGB3P16-201ENST00000508037 287 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 RNU6-202P-201ENST00000515998 96 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 RNU6-709P-201ENST00000517257 104 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.37□□□□□ -1.55
HPS3Q969F9 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC5.37□□□□□ -1.55
HPS3Q969F9 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.37□□□□□ -1.55
HPS3Q969F9 AC008033.2-201ENST00000542626 177 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 UBE2NP1-201ENST00000545592 458 ntBASIC5.37□□□□□ -1.55
HPS3Q969F9 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC5.37□□□□□ -1.55
HPS3Q969F9 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms