Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AMD1P2-201ENST00000412936 992 ntBASIC3.38□□□□□ -1.87
CHD3Q12873 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC3.38□□□□□ -1.87
CHD3Q12873 YWHAQP9-201ENST00000445891 512 ntBASIC3.38□□□□□ -1.87
CHD3Q12873 NPM1P39-201ENST00000449818 867 ntBASIC3.38□□□□□ -1.87
CHD3Q12873 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.38□□□□□ -1.87
CHD3Q12873 FABP3P2-201ENST00000453169 399 ntBASIC3.38□□□□□ -1.87
CHD3Q12873 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.38□□□□□ -1.87
CHD3Q12873 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.38□□□□□ -1.87
CHD3Q12873 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.38□□□□□ -1.87
CHD3Q12873 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CHD3Q12873 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.38□□□□□ -1.87
CHD3Q12873 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.38□□□□□ -1.87
CHD3Q12873 AC005412.1-201ENST00000580812 1049 ntBASIC3.38□□□□□ -1.87
CHD3Q12873 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.38□□□□□ -1.87
CHD3Q12873 AL137849.1-201ENST00000604767 169 ntBASIC3.38□□□□□ -1.87
CHD3Q12873 AL391497.1-201ENST00000608671 547 ntBASIC3.38□□□□□ -1.87
CHD3Q12873 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.38□□□□□ -1.87
CHD3Q12873 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CHD3Q12873 CASC19-284ENST00000642142 1868 ntBASIC3.38□□□□□ -1.87
CHD3Q12873 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.38□□□□□ -1.87
CHD3Q12873 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 MIR365B-201ENST00000362317 111 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 PTMAP5-201ENST00000393073 333 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.37□□□□□ -1.87
CHD3Q12873 PGBD4P8-201ENST00000412993 562 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.37□□□□□ -1.87
CHD3Q12873 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.37□□□□□ -1.87
CHD3Q12873 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 PPIAP3-201ENST00000450588 505 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 APOOP2-201ENST00000461561 539 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.37□□□□□ -1.87
CHD3Q12873 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
CHD3Q12873 MIR2114-201ENST00000516645 80 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.37□□□□□ -1.87
CHD3Q12873 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.37□□□□□ -1.87
CHD3Q12873 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.37□□□□□ -1.87
CHD3Q12873 AC135001.1-201ENST00000544546 283 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 AL139286.1-201ENST00000604465 483 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.37□□□□□ -1.87
CHD3Q12873 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.37□□□□□ -1.87
CHD3Q12873 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
CHD3Q12873 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.37□□□□□ -1.87
CHD3Q12873 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 RNA5SP322-201ENST00000363617 119 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.37□□□□□ -1.87
CHD3Q12873 PLGLA-201ENST00000465668 449 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 AC018635.1-201ENST00000468292 1030 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.37□□□□□ -1.87
CHD3Q12873 AC016550.3-201ENST00000515706 767 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 AC092851.1-201ENST00000535964 478 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.37□□□□□ -1.87
CHD3Q12873 MIR5195-201ENST00000583555 115 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 U6.105-201ENST00000637379 88 ntBASIC3.37□□□□□ -1.87
CHD3Q12873 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
CHD3Q12873 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.37□□□□□ -1.87
CHD3Q12873 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHD3Q12873 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 SNORD35B-201ENST00000363660 87 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CHD3Q12873 RNU11-4P-201ENST00000391149 133 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.36□□□□□ -1.87
CHD3Q12873 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.36□□□□□ -1.87
CHD3Q12873 PPIAP17-201ENST00000438507 471 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 HMGB1P37-201ENST00000439613 609 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 AC007688.1-201ENST00000475592 759 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AL358832.1-201ENST00000497800 389 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 AC109458.1-201ENST00000508858 316 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.36□□□□□ -1.87
CHD3Q12873 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.36□□□□□ -1.87
CHD3Q12873 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.36□□□□□ -1.87
CHD3Q12873 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.36□□□□□ -1.87
CHD3Q12873 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.36□□□□□ -1.87
CHD3Q12873 AC008011.1-201ENST00000545989 227 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 RPL23AP87-202ENST00000573039 466 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AC091167.4-201ENST00000605079 184 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AL592436.1-201ENST00000605135 558 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 OR2BH1P-201ENST00000608850 864 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.36□□□□□ -1.87
CHD3Q12873 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
CHD3Q12873 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.36□□□□□ -1.87
CHD3Q12873 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 AC097504.1-201ENST00000515103 2415 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CHD3Q12873 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms