Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ELOCP15-201ENST00000442090 332 ntBASIC5.92□□□□□ -1.46
CUX1P39880 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.92□□□□□ -1.46
CUX1P39880 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.92□□□□□ -1.46
CUX1P39880 AK5-208ENST00000478255 556 ntTSL 2 BASIC5.92□□□□□ -1.46
CUX1P39880 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC5.92□□□□□ -1.46
CUX1P39880 AC097462.2-201ENST00000504623 481 ntBASIC5.92□□□□□ -1.46
CUX1P39880 STMN1P2-201ENST00000508435 439 ntBASIC5.92□□□□□ -1.46
CUX1P39880 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.92□□□□□ -1.46
CUX1P39880 MIR4672-201ENST00000583126 81 ntBASIC5.92□□□□□ -1.46
CUX1P39880 MIR4276-201ENST00000584832 70 ntBASIC5.92□□□□□ -1.46
CUX1P39880 AL163642.2-201ENST00000604722 1019 ntBASIC5.92□□□□□ -1.46
CUX1P39880 AL353600.1-201ENST00000608148 251 ntBASIC5.92□□□□□ -1.46
CUX1P39880 AP003355.3-201ENST00000623465 114 ntBASIC5.92□□□□□ -1.46
CUX1P39880 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CUX1P39880 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CUX1P39880 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CUX1P39880 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CUX1P39880 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CUX1P39880 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CUX1P39880 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
CUX1P39880 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC5.91□□□□□ -1.46
CUX1P39880 AC099563.1-201ENST00000456086 418 ntBASIC5.91□□□□□ -1.46
CUX1P39880 RPS3AP14-201ENST00000483907 780 ntBASIC5.91□□□□□ -1.46
CUX1P39880 HMGB3P13-201ENST00000511263 607 ntBASIC5.91□□□□□ -1.46
CUX1P39880 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC5.91□□□□□ -1.46
CUX1P39880 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
CUX1P39880 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CUX1P39880 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CUX1P39880 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CUX1P39880 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.91□□□□□ -1.46
CUX1P39880 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.91□□□□□ -1.46
CUX1P39880 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CUX1P39880 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
CUX1P39880 OR10J6P-201ENST00000289731 930 ntBASIC5.9□□□□□ -1.46
CUX1P39880 RNA5SP52-201ENST00000362448 134 ntBASIC5.9□□□□□ -1.46
CUX1P39880 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CUX1P39880 AP006245.1-201ENST00000522549 120 ntBASIC5.9□□□□□ -1.46
CUX1P39880 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.9□□□□□ -1.46
CUX1P39880 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CUX1P39880 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.9□□□□□ -1.47
CUX1P39880 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
CUX1P39880 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.9□□□□□ -1.47
CUX1P39880 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CUX1P39880 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.9□□□□□ -1.47
CUX1P39880 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
CUX1P39880 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CUX1P39880 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CUX1P39880 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CUX1P39880 Y_RNA.500-201ENST00000384466 111 ntBASIC5.89□□□□□ -1.47
CUX1P39880 U3.39-201ENST00000408569 239 ntBASIC5.89□□□□□ -1.47
CUX1P39880 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.89□□□□□ -1.47
CUX1P39880 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC5.89□□□□□ -1.47
CUX1P39880 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC5.89□□□□□ -1.47
CUX1P39880 AC091905.1-201ENST00000624400 311 ntBASIC5.89□□□□□ -1.47
CUX1P39880 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC5.89□□□□□ -1.47
CUX1P39880 AL645937.1-201ENST00000641739 1652 ntBASIC5.89□□□□□ -1.47
CUX1P39880 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CUX1P39880 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
CUX1P39880 AC007656.2-201ENST00000624902 4547 ntBASIC5.89□□□□□ -1.47
CUX1P39880 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CUX1P39880 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
CUX1P39880 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CUX1P39880 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CUX1P39880 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CUX1P39880 U3.26-201ENST00000391236 204 ntBASIC5.89□□□□□ -1.47
CUX1P39880 VN1R51P-201ENST00000411675 945 ntBASIC5.89□□□□□ -1.47
CUX1P39880 BX842559.1-201ENST00000419615 532 ntBASIC5.89□□□□□ -1.47
CUX1P39880 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC5.89□□□□□ -1.47
CUX1P39880 TAF8-207ENST00000482432 556 ntTSL 2 BASIC5.89□□□□□ -1.47
CUX1P39880 IGHV3-32-201ENST00000519182 355 ntBASIC5.89□□□□□ -1.47
CUX1P39880 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.89□□□□□ -1.47
CUX1P39880 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.89□□□□□ -1.47
CUX1P39880 MRPS35P3-201ENST00000603189 709 ntBASIC5.89□□□□□ -1.47
CUX1P39880 AL669942.2-201ENST00000620352 697 ntBASIC5.89□□□□□ -1.47
CUX1P39880 SCARNA15.3-201ENST00000626315 122 ntBASIC5.89□□□□□ -1.47
CUX1P39880 SCARNA4.1-201ENST00000628597 123 ntBASIC5.89□□□□□ -1.47
CUX1P39880 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC5.89□□□□□ -1.47
CUX1P39880 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CUX1P39880 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CUX1P39880 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.88□□□□□ -1.47
CUX1P39880 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CUX1P39880 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
CUX1P39880 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CUX1P39880 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CUX1P39880 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CUX1P39880 GSTA8P-201ENST00000404253 637 ntBASIC5.88□□□□□ -1.47
CUX1P39880 AC063979.1-201ENST00000415539 377 ntBASIC5.88□□□□□ -1.47
CUX1P39880 OR1AA1P-201ENST00000419597 916 ntBASIC5.88□□□□□ -1.47
CUX1P39880 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC5.88□□□□□ -1.47
CUX1P39880 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC5.88□□□□□ -1.47
CUX1P39880 AC010680.3-201ENST00000604215 520 ntBASIC5.88□□□□□ -1.47
CUX1P39880 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CUX1P39880 AC139713.2-215ENST00000641428 5037 ntBASIC5.87□□□□□ -1.47
CUX1P39880 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CUX1P39880 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CUX1P39880 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.87□□□□□ -1.47
CUX1P39880 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CUX1P39880 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.87□□□□□ -1.47
CUX1P39880 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC5.87□□□□□ -1.47
CUX1P39880 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms