Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CLDN3O15551 MIR142-201ENST00000384835 87 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 SNORA57.1-201ENST00000391227 145 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 HMGB3P19-201ENST00000403971 560 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AL590290.1-201ENST00000405336 380 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AC004552.1-201ENST00000419089 348 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 TPTE2P6-202ENST00000445572 1007 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN3O15551 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.39□□□□□ -1.71
CLDN3O15551 RPS26P3-201ENST00000470205 348 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AC090543.2-201ENST00000483963 348 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AC004057.1-201ENST00000485827 348 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 TPT1P3-201ENST00000492841 512 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AC025445.1-201ENST00000502728 300 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
CLDN3O15551 FTH1P21-201ENST00000512179 511 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.39□□□□□ -1.71
CLDN3O15551 AC091516.1-201ENST00000549191 703 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AC084824.1-201ENST00000550917 1005 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.39□□□□□ -1.71
CLDN3O15551 AC007599.1-201ENST00000568688 1174 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.39□□□□□ -1.71
CLDN3O15551 CBX3P2-202ENST00000583365 535 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 VN1R85P-201ENST00000601587 426 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 OR6R2P-201ENST00000609216 300 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AC024941.1-201ENST00000612250 334 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 U6.48-201ENST00000618523 106 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
CLDN3O15551 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN3O15551 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN3O15551 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.39□□□□□ -1.71
CLDN3O15551 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLDN3O15551 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLDN3O15551 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CLDN3O15551 RNA5SP306-201ENST00000411087 107 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 MTCO3P4-201ENST00000419236 787 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CLDN3O15551 OR8F1P-201ENST00000425243 930 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.38□□□□□ -1.71
CLDN3O15551 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 RPS11P1-201ENST00000451072 473 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 FABP3P2-201ENST00000453169 399 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 RN7SKP141-201ENST00000516167 338 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 SNORA26.10-201ENST00000516427 141 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 IGKV2-38-201ENST00000517443 247 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.38□□□□□ -1.71
CLDN3O15551 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.38□□□□□ -1.71
CLDN3O15551 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.38□□□□□ -1.71
CLDN3O15551 OR4U1P-201ENST00000554958 912 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.38□□□□□ -1.71
CLDN3O15551 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.38□□□□□ -1.71
CLDN3O15551 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.38□□□□□ -1.71
CLDN3O15551 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.38□□□□□ -1.71
CLDN3O15551 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
CLDN3O15551 AC095038.2-201ENST00000621464 1070 ntBASIC4.38□□□□□ -1.71
CLDN3O15551 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.38□□□□□ -1.71
CLDN3O15551 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CLDN3O15551 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CLDN3O15551 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
CLDN3O15551 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
CLDN3O15551 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.37□□□□□ -1.71
CLDN3O15551 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CLDN3O15551 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.37□□□□□ -1.71
CLDN3O15551 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
CLDN3O15551 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.37□□□□□ -1.71
CLDN3O15551 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
CLDN3O15551 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CLDN3O15551 OR5T3-201ENST00000303059 1023 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 SNORD115-48-201ENST00000364764 76 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CLDN3O15551 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.37□□□□□ -1.71
CLDN3O15551 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.37□□□□□ -1.71
CLDN3O15551 MIR1251-201ENST00000408552 70 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 RPL30P3-201ENST00000424262 333 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 NANOGP6-201ENST00000429190 847 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 TBCAP1-201ENST00000436520 327 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.37□□□□□ -1.71
CLDN3O15551 XKRY2-201ENST00000442362 1093 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.37□□□□□ -1.71
CLDN3O15551 SYT14P1-201ENST00000481459 721 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 HNRNPKP5-201ENST00000515300 253 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 IGKV2-36-201ENST00000519999 223 ntBASIC4.37□□□□□ -1.71
CLDN3O15551 AC004923.2-201ENST00000529649 369 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms