Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 KSR1P1-201ENST00000446298 240 ntBASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A3BPQ9Y5P4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.64■■□□□ 1.06
COL4A3BPQ9Y5P4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.64■■□□□ 1.06
COL4A3BPQ9Y5P4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A3BPQ9Y5P4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.64■■□□□ 1.06
COL4A3BPQ9Y5P4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A3BPQ9Y5P4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 AL355355.2-201ENST00000442321 338 ntBASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 AL355075.4-201ENST00000554988 638 ntBASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 AP003071.4-201ENST00000562276 1284 ntBASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.64■■□□□ 1.05
COL4A3BPQ9Y5P4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 TSPY15P-201ENST00000457163 923 ntBASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 AC073912.3-201ENST00000624414 853 ntBASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 CR392000.1-201ENST00000624770 1228 ntBASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 KRT16P1-201ENST00000399124 1418 ntBASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 KRT8P8-201ENST00000434750 1448 ntBASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A3BPQ9Y5P4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 BX088651.1-201ENST00000540551 451 ntBASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL4A3BPQ9Y5P4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 NUDT16P1-203ENST00000513809 620 ntBASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms