Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
COL17A1Q9UMD9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
COL17A1Q9UMD9 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC29.39■■■□□ 2.3
COL17A1Q9UMD9 AC079602.3-201ENST00000623931 403 ntBASIC29.39■■■□□ 2.3
COL17A1Q9UMD9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
COL17A1Q9UMD9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
COL17A1Q9UMD9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC29.39■■■□□ 2.29
COL17A1Q9UMD9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 TOB2P1-201ENST00000469761 992 ntBASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 AL353801.3-201ENST00000609898 542 ntBASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 AC005229.4-201ENST00000610085 2198 ntBASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL17A1Q9UMD9 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC29.37■■■□□ 2.29
COL17A1Q9UMD9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC29.37■■■□□ 2.29
COL17A1Q9UMD9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL17A1Q9UMD9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC29.37■■■□□ 2.29
COL17A1Q9UMD9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL17A1Q9UMD9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
COL17A1Q9UMD9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL17A1Q9UMD9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
COL17A1Q9UMD9 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 PHGDH-210ENST00000641115 1638 ntBASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 ABR-204ENST00000543210 1049 ntTSL 2 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
COL17A1Q9UMD9 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 GGCT-205ENST00000409436 954 ntTSL 3 BASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 POLD2P1-201ENST00000511220 997 ntBASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 KRT18P58-201ENST00000527480 1120 ntBASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL17A1Q9UMD9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 TBC1D3P2-202ENST00000577902 1649 ntBASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL17A1Q9UMD9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC29.33■■■□□ 2.29
COL17A1Q9UMD9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL17A1Q9UMD9 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 COX10-202ENST00000429152 875 ntTSL 2 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 HLA-F-220ENST00000434407 884 ntBASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 AC034232.1-201ENST00000506026 1064 ntBASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC29.31■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms