Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.29■□□□□ 0.84
CDX2Q99626 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CDX2Q99626 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.29■□□□□ 0.84
CDX2Q99626 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDX2Q99626 AL121603.2-201ENST00000557373 2117 ntBASIC20.29■□□□□ 0.84
CDX2Q99626 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.28■□□□□ 0.84
CDX2Q99626 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.28■□□□□ 0.84
CDX2Q99626 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDX2Q99626 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX2Q99626 AC121338.2-201ENST00000622535 1744 ntBASIC20.28■□□□□ 0.84
CDX2Q99626 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX2Q99626 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CDX2Q99626 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX2Q99626 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CDX2Q99626 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDX2Q99626 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
CDX2Q99626 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.28■□□□□ 0.84
CDX2Q99626 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
CDX2Q99626 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.28■□□□□ 0.84
CDX2Q99626 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.28■□□□□ 0.84
CDX2Q99626 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.28■□□□□ 0.84
CDX2Q99626 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
CDX2Q99626 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.28■□□□□ 0.84
CDX2Q99626 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.28■□□□□ 0.84
CDX2Q99626 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.28■□□□□ 0.84
CDX2Q99626 AP001160.2-201ENST00000596071 487 ntBASIC20.28■□□□□ 0.84
CDX2Q99626 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDX2Q99626 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX2Q99626 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.28■□□□□ 0.84
CDX2Q99626 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX2Q99626 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CDX2Q99626 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.27■□□□□ 0.84
CDX2Q99626 DPP3P2-201ENST00000416030 1696 ntBASIC20.27■□□□□ 0.84
CDX2Q99626 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.27■□□□□ 0.84
CDX2Q99626 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.27■□□□□ 0.84
CDX2Q99626 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDX2Q99626 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.27■□□□□ 0.84
CDX2Q99626 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.27■□□□□ 0.84
CDX2Q99626 RPL13AP23-201ENST00000480739 586 ntBASIC20.27■□□□□ 0.84
CDX2Q99626 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.27■□□□□ 0.84
CDX2Q99626 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CDX2Q99626 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CDX2Q99626 KRT8P11-201ENST00000409686 1436 ntBASIC20.27■□□□□ 0.83
CDX2Q99626 AC005229.4-201ENST00000610085 2198 ntBASIC20.27■□□□□ 0.83
CDX2Q99626 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CDX2Q99626 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX2Q99626 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDX2Q99626 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CDX2Q99626 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.26■□□□□ 0.83
CDX2Q99626 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDX2Q99626 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.26■□□□□ 0.83
CDX2Q99626 AC243591.1-201ENST00000452967 1364 ntBASIC20.26■□□□□ 0.83
CDX2Q99626 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDX2Q99626 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.26■□□□□ 0.83
CDX2Q99626 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.26■□□□□ 0.83
CDX2Q99626 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX2Q99626 AC098831.1-202ENST00000438821 336 ntBASIC20.26■□□□□ 0.83
CDX2Q99626 AC093909.1-201ENST00000504731 1122 ntBASIC20.26■□□□□ 0.83
CDX2Q99626 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX2Q99626 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.26■□□□□ 0.83
CDX2Q99626 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.26■□□□□ 0.83
CDX2Q99626 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.26■□□□□ 0.83
CDX2Q99626 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CDX2Q99626 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.26■□□□□ 0.83
CDX2Q99626 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDX2Q99626 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CDX2Q99626 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.25■□□□□ 0.83
CDX2Q99626 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX2Q99626 AC233702.3-201ENST00000578656 1387 ntBASIC20.25■□□□□ 0.83
CDX2Q99626 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CDX2Q99626 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX2Q99626 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.25■□□□□ 0.83
CDX2Q99626 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX2Q99626 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDX2Q99626 AC009065.1-201ENST00000564055 1225 ntBASIC20.25■□□□□ 0.83
CDX2Q99626 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.25■□□□□ 0.83
CDX2Q99626 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.25■□□□□ 0.83
CDX2Q99626 MIR3197-201ENST00000582241 73 ntBASIC20.25■□□□□ 0.83
CDX2Q99626 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX2Q99626 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.25■□□□□ 0.83
CDX2Q99626 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX2Q99626 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.25■□□□□ 0.83
CDX2Q99626 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.25■□□□□ 0.83
CDX2Q99626 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX2Q99626 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDX2Q99626 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms