Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.73■□□□□ 0.75
TTC28Q96AY4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 AC233702.3-201ENST00000578656 1387 ntBASIC19.72■□□□□ 0.75
TTC28Q96AY4 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TTC28Q96AY4 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TTC28Q96AY4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TTC28Q96AY4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TTC28Q96AY4 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TTC28Q96AY4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
TTC28Q96AY4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TTC28Q96AY4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TTC28Q96AY4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
TTC28Q96AY4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.71■□□□□ 0.75
TTC28Q96AY4 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TTC28Q96AY4 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
TTC28Q96AY4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TTC28Q96AY4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TTC28Q96AY4 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TTC28Q96AY4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.71■□□□□ 0.75
TTC28Q96AY4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.71■□□□□ 0.75
TTC28Q96AY4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.71■□□□□ 0.75
TTC28Q96AY4 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TTC28Q96AY4 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.71■□□□□ 0.75
TTC28Q96AY4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.71■□□□□ 0.75
TTC28Q96AY4 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 KRT18P28-201ENST00000453838 1332 ntBASIC19.7■□□□□ 0.74
TTC28Q96AY4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 MIR4674-201ENST00000582457 87 ntBASIC19.7■□□□□ 0.74
TTC28Q96AY4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 MED15P5-201ENST00000423150 992 ntBASIC19.7■□□□□ 0.74
TTC28Q96AY4 IGHV3-47-201ENST00000425060 335 ntBASIC19.7■□□□□ 0.74
TTC28Q96AY4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 AP006288.1-201ENST00000446065 395 ntBASIC19.7■□□□□ 0.74
TTC28Q96AY4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.7■□□□□ 0.74
TTC28Q96AY4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TTC28Q96AY4 ZNF259P1-201ENST00000407656 1365 ntBASIC19.7■□□□□ 0.74
TTC28Q96AY4 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TTC28Q96AY4 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 LINC01465-201ENST00000408887 1940 ntBASIC19.69■□□□□ 0.74
TTC28Q96AY4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 AC004832.2-201ENST00000426397 482 ntBASIC19.69■□□□□ 0.74
TTC28Q96AY4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TTC28Q96AY4 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TTC28Q96AY4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TTC28Q96AY4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TTC28Q96AY4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 Z69720.1-201ENST00000601483 472 ntBASIC19.68■□□□□ 0.74
TTC28Q96AY4 KRT8P17-201ENST00000453110 1448 ntBASIC19.68■□□□□ 0.74
TTC28Q96AY4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms