Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 AL031008.1-201ENST00000619963 541 ntBASIC16.16■□□□□ 0.18
VPS13CQ709C8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13CQ709C8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 AC111152.3-201ENST00000569699 673 ntBASIC16.15■□□□□ 0.18
VPS13CQ709C8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS13CQ709C8 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS13CQ709C8 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
VPS13CQ709C8 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS13CQ709C8 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS13CQ709C8 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.15■□□□□ 0.18
VPS13CQ709C8 AC006538.3-201ENST00000612495 578 ntBASIC16.15■□□□□ 0.18
VPS13CQ709C8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
VPS13CQ709C8 AL645929.1-201ENST00000420084 975 ntBASIC16.15■□□□□ 0.18
VPS13CQ709C8 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS13CQ709C8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS13CQ709C8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13CQ709C8 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
VPS13CQ709C8 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.14■□□□□ 0.18
VPS13CQ709C8 AP002469.2-201ENST00000531724 424 ntBASIC16.14■□□□□ 0.18
VPS13CQ709C8 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13CQ709C8 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 AL023973.1-201ENST00000624619 620 ntBASIC16.14■□□□□ 0.17
VPS13CQ709C8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13CQ709C8 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13CQ709C8 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13CQ709C8 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 AL136038.3-201ENST00000561909 1096 ntBASIC16.14■□□□□ 0.17
VPS13CQ709C8 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13CQ709C8 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13CQ709C8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 AL157384.1-201ENST00000445995 2473 ntBASIC16.14■□□□□ 0.17
VPS13CQ709C8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VPS13CQ709C8 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 AC099343.3-201ENST00000605834 2503 ntBASIC16.13■□□□□ 0.17
VPS13CQ709C8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 TUBB8P6-201ENST00000436895 1288 ntBASIC16.13■□□□□ 0.17
VPS13CQ709C8 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13CQ709C8 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13CQ709C8 LINC01311-201ENST00000565162 1445 ntBASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms