Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 LINC01465-201ENST00000408887 1940 ntBASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 AL391422.3-201ENST00000603791 2761 ntBASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC15.97■□□□□ 0.15
CSPG4Q6UVK1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 STARP1-201ENST00000397973 869 ntBASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.96■□□□□ 0.15
CSPG4Q6UVK1 AC007225.1-201ENST00000566331 1836 ntBASIC15.96■□□□□ 0.14
CSPG4Q6UVK1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC15.96■□□□□ 0.14
CSPG4Q6UVK1 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.96■□□□□ 0.14
CSPG4Q6UVK1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
CSPG4Q6UVK1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
CSPG4Q6UVK1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CSPG4Q6UVK1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 AP000523.1-201ENST00000398242 1049 ntBASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 AL845331.1-201ENST00000424978 1190 ntBASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CSPG4Q6UVK1 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 IFNL4P1-201ENST00000607083 540 ntBASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
CSPG4Q6UVK1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms