Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.27■□□□□ 0.99
CCDC40Q4G0X9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.27■□□□□ 0.99
CCDC40Q4G0X9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC40Q4G0X9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC40Q4G0X9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 ID1-201ENST00000376105 1233 ntBASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 KRT8P8-201ENST00000434750 1448 ntBASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC40Q4G0X9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 UNC93B5-201ENST00000530315 699 ntBASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
CCDC40Q4G0X9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC40Q4G0X9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 POM121L13P-201ENST00000422362 380 ntBASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 TUBB8P6-201ENST00000436895 1288 ntBASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 RNA5SP413-201ENST00000516373 109 ntBASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms