Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.58■□□□□ 0.89
USP41Q3LFD5 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.58■□□□□ 0.89
USP41Q3LFD5 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP41Q3LFD5 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP41Q3LFD5 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP41Q3LFD5 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
USP41Q3LFD5 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.58■□□□□ 0.89
USP41Q3LFD5 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.58■□□□□ 0.89
USP41Q3LFD5 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP41Q3LFD5 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.58■□□□□ 0.89
USP41Q3LFD5 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.58■□□□□ 0.89
USP41Q3LFD5 AL353719.1-201ENST00000566847 864 ntBASIC20.58■□□□□ 0.89
USP41Q3LFD5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.58■□□□□ 0.88
USP41Q3LFD5 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP41Q3LFD5 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP41Q3LFD5 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.58■□□□□ 0.88
USP41Q3LFD5 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
USP41Q3LFD5 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP41Q3LFD5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.58■□□□□ 0.88
USP41Q3LFD5 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP41Q3LFD5 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
USP41Q3LFD5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 LINC01521-201ENST00000504184 1943 ntBASIC20.57■□□□□ 0.88
USP41Q3LFD5 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 AC117947.1-201ENST00000427448 529 ntBASIC20.57■□□□□ 0.88
USP41Q3LFD5 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 CKBP1-201ENST00000565489 1086 ntBASIC20.57■□□□□ 0.88
USP41Q3LFD5 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 GABARAPL3-202ENST00000624044 1851 ntBASIC20.57■□□□□ 0.88
USP41Q3LFD5 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.57■□□□□ 0.88
USP41Q3LFD5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP41Q3LFD5 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.56■□□□□ 0.88
USP41Q3LFD5 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.56■□□□□ 0.88
USP41Q3LFD5 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.56■□□□□ 0.88
USP41Q3LFD5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.56■□□□□ 0.88
USP41Q3LFD5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.56■□□□□ 0.88
USP41Q3LFD5 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.56■□□□□ 0.88
USP41Q3LFD5 AC063952.2-201ENST00000498792 1227 ntBASIC20.56■□□□□ 0.88
USP41Q3LFD5 AC022616.7-201ENST00000525383 220 ntBASIC20.56■□□□□ 0.88
USP41Q3LFD5 AL512604.3-201ENST00000569583 964 ntBASIC20.56■□□□□ 0.88
USP41Q3LFD5 AC139887.4-201ENST00000607877 719 ntBASIC20.56■□□□□ 0.88
USP41Q3LFD5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
USP41Q3LFD5 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
USP41Q3LFD5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP41Q3LFD5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 RNF152P1-201ENST00000397754 604 ntBASIC20.55■□□□□ 0.88
USP41Q3LFD5 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP41Q3LFD5 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP41Q3LFD5 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 AL391422.3-201ENST00000603791 2761 ntBASIC20.54■□□□□ 0.88
USP41Q3LFD5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 COX11P1-201ENST00000489116 835 ntBASIC20.54■□□□□ 0.88
USP41Q3LFD5 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms