Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.29■■□□□ 1
CLCN3P51790 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CLCN3P51790 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.29■■□□□ 1
CLCN3P51790 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.29■■□□□ 1
CLCN3P51790 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.29■■□□□ 1
CLCN3P51790 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.29■■□□□ 1
CLCN3P51790 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
CLCN3P51790 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.29■■□□□ 1
CLCN3P51790 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.28■■□□□ 1
CLCN3P51790 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CLCN3P51790 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.28■■□□□ 1
CLCN3P51790 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.28■■□□□ 1
CLCN3P51790 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.28■■□□□ 1
CLCN3P51790 AC128688.1-201ENST00000487626 519 ntBASIC21.28■■□□□ 1
CLCN3P51790 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.28■■□□□ 1
CLCN3P51790 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.28■■□□□ 1
CLCN3P51790 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.28■■□□□ 1
CLCN3P51790 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.28■■□□□ 1
CLCN3P51790 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CLCN3P51790 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLCN3P51790 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CLCN3P51790 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.27■■□□□ 1
CLCN3P51790 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CLCN3P51790 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CLCN3P51790 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLCN3P51790 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.27■■□□□ 1
CLCN3P51790 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLCN3P51790 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.27■■□□□ 1
CLCN3P51790 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.27■■□□□ 1
CLCN3P51790 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.27■■□□□ 1
CLCN3P51790 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.27■■□□□ 1
CLCN3P51790 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CLCN3P51790 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.27■■□□□ 1
CLCN3P51790 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLCN3P51790 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.27■■□□□ 1
CLCN3P51790 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CLCN3P51790 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
CLCN3P51790 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.27■□□□□ 0.99
CLCN3P51790 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
CLCN3P51790 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CLCN3P51790 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.27■□□□□ 0.99
CLCN3P51790 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.26■□□□□ 0.99
CLCN3P51790 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CLCN3P51790 AC104417.2-201ENST00000562989 1793 ntBASIC21.26■□□□□ 0.99
CLCN3P51790 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.26■□□□□ 0.99
CLCN3P51790 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.26■□□□□ 0.99
CLCN3P51790 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.26■□□□□ 0.99
CLCN3P51790 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.26■□□□□ 0.99
CLCN3P51790 AC116562.4-202ENST00000641738 218 ntBASIC21.26■□□□□ 0.99
CLCN3P51790 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.26■□□□□ 0.99
CLCN3P51790 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
CLCN3P51790 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.26■□□□□ 0.99
CLCN3P51790 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCN3P51790 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.26■□□□□ 0.99
CLCN3P51790 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CLCN3P51790 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCN3P51790 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CLCN3P51790 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CLCN3P51790 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCN3P51790 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCN3P51790 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.25■□□□□ 0.99
CLCN3P51790 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCN3P51790 ZNF815P-204ENST00000434898 1737 ntBASIC21.25■□□□□ 0.99
CLCN3P51790 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.25■□□□□ 0.99
CLCN3P51790 CKBP1-201ENST00000565489 1086 ntBASIC21.25■□□□□ 0.99
CLCN3P51790 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.25■□□□□ 0.99
CLCN3P51790 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.25■□□□□ 0.99
CLCN3P51790 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCN3P51790 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms