Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
HNF4AP41235 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.74■□□□□ 0.59
HNF4AP41235 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 TUBB8P6-201ENST00000436895 1288 ntBASIC18.74■□□□□ 0.59
HNF4AP41235 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.74■□□□□ 0.59
HNF4AP41235 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.74■□□□□ 0.59
HNF4AP41235 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.74■□□□□ 0.59
HNF4AP41235 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 MTDHP1-201ENST00000605323 784 ntBASIC18.74■□□□□ 0.59
HNF4AP41235 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.74■□□□□ 0.59
HNF4AP41235 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.74■□□□□ 0.59
HNF4AP41235 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.74■□□□□ 0.59
HNF4AP41235 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HNF4AP41235 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.73■□□□□ 0.59
HNF4AP41235 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HNF4AP41235 BX323043.1-201ENST00000641006 1765 ntBASIC18.73■□□□□ 0.59
HNF4AP41235 AC087289.5-201ENST00000586076 3175 ntBASIC18.73■□□□□ 0.59
HNF4AP41235 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HNF4AP41235 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HNF4AP41235 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HNF4AP41235 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HNF4AP41235 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.73■□□□□ 0.59
HNF4AP41235 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HNF4AP41235 ABHD17AP1-201ENST00000358206 933 ntBASIC18.73■□□□□ 0.59
HNF4AP41235 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.73■□□□□ 0.59
HNF4AP41235 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
HNF4AP41235 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.73■□□□□ 0.59
HNF4AP41235 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.73■□□□□ 0.59
HNF4AP41235 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HNF4AP41235 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
HNF4AP41235 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HNF4AP41235 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HNF4AP41235 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HNF4AP41235 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HNF4AP41235 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
HNF4AP41235 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HNF4AP41235 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HNF4AP41235 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
HNF4AP41235 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.72■□□□□ 0.59
HNF4AP41235 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HNF4AP41235 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
HNF4AP41235 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.72■□□□□ 0.59
HNF4AP41235 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.72■□□□□ 0.59
HNF4AP41235 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.72■□□□□ 0.59
HNF4AP41235 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
HNF4AP41235 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.72■□□□□ 0.59
HNF4AP41235 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.72■□□□□ 0.59
HNF4AP41235 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.72■□□□□ 0.59
HNF4AP41235 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HNF4AP41235 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HNF4AP41235 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HNF4AP41235 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HNF4AP41235 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 KRASP1-201ENST00000407852 552 ntBASIC18.71■□□□□ 0.59
HNF4AP41235 AC239809.2-201ENST00000415381 517 ntBASIC18.71■□□□□ 0.59
HNF4AP41235 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HNF4AP41235 C1QBPP2-201ENST00000528754 825 ntBASIC18.71■□□□□ 0.59
HNF4AP41235 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.71■□□□□ 0.59
HNF4AP41235 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.71■□□□□ 0.59
HNF4AP41235 RN7SL471P-201ENST00000580476 299 ntBASIC18.71■□□□□ 0.59
HNF4AP41235 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.71■□□□□ 0.59
HNF4AP41235 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.71■□□□□ 0.59
HNF4AP41235 ITM2C-210ENST00000620962 501 ntBASIC18.71■□□□□ 0.59
HNF4AP41235 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
HNF4AP41235 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HNF4AP41235 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.71■□□□□ 0.59
HNF4AP41235 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
HNF4AP41235 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms