Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.91■□□□□ 0.3
COL8A1P27658 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.91■□□□□ 0.3
COL8A1P27658 STARP1-201ENST00000397973 869 ntBASIC16.91■□□□□ 0.3
COL8A1P27658 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.91■□□□□ 0.3
COL8A1P27658 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.91■□□□□ 0.3
COL8A1P27658 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.91■□□□□ 0.3
COL8A1P27658 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.91■□□□□ 0.3
COL8A1P27658 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.91■□□□□ 0.3
COL8A1P27658 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.91■□□□□ 0.3
COL8A1P27658 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.91■□□□□ 0.3
COL8A1P27658 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.91■□□□□ 0.3
COL8A1P27658 AL024507.2-201ENST00000606070 2574 ntBASIC16.91■□□□□ 0.3
COL8A1P27658 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL8A1P27658 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.91■□□□□ 0.3
COL8A1P27658 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC16.9■□□□□ 0.3
COL8A1P27658 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC16.9■□□□□ 0.3
COL8A1P27658 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.9■□□□□ 0.3
COL8A1P27658 TSSC2-201ENST00000450217 709 ntBASIC16.9■□□□□ 0.3
COL8A1P27658 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.9■□□□□ 0.3
COL8A1P27658 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.9■□□□□ 0.3
COL8A1P27658 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.9■□□□□ 0.3
COL8A1P27658 MIR3180-1-201ENST00000580374 94 ntBASIC16.9■□□□□ 0.3
COL8A1P27658 MIR3180-3-201ENST00000584616 94 ntBASIC16.9■□□□□ 0.3
COL8A1P27658 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.9■□□□□ 0.3
COL8A1P27658 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL8A1P27658 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.9■□□□□ 0.3
COL8A1P27658 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
COL8A1P27658 AC116351.2-201ENST00000606540 1585 ntBASIC16.89■□□□□ 0.3
COL8A1P27658 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.89■□□□□ 0.29
COL8A1P27658 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.89■□□□□ 0.29
COL8A1P27658 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
COL8A1P27658 AL160237.2-201ENST00000556165 472 ntBASIC16.89■□□□□ 0.29
COL8A1P27658 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.89■□□□□ 0.29
COL8A1P27658 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.89■□□□□ 0.29
COL8A1P27658 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.89■□□□□ 0.29
COL8A1P27658 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COL8A1P27658 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
COL8A1P27658 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
COL8A1P27658 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL8A1P27658 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
COL8A1P27658 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.88■□□□□ 0.29
COL8A1P27658 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 AC018553.1-201ENST00000616682 1458 ntBASIC16.88■□□□□ 0.29
COL8A1P27658 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL8A1P27658 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.88■□□□□ 0.29
COL8A1P27658 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL8A1P27658 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
COL8A1P27658 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 AL645929.1-201ENST00000420084 975 ntBASIC16.88■□□□□ 0.29
COL8A1P27658 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL8A1P27658 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.88■□□□□ 0.29
COL8A1P27658 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.88■□□□□ 0.29
COL8A1P27658 AL671883.3-201ENST00000603274 991 ntBASIC16.88■□□□□ 0.29
COL8A1P27658 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL8A1P27658 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.88■□□□□ 0.29
COL8A1P27658 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC16.88■□□□□ 0.29
COL8A1P27658 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL8A1P27658 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms