Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.62■□□□□ 0.57
COL5A1P20908 KRT8P11-201ENST00000409686 1436 ntBASIC18.62■□□□□ 0.57
COL5A1P20908 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A1P20908 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A1P20908 SMG8-203ENST00000578922 2178 ntBASIC18.61■□□□□ 0.57
COL5A1P20908 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.61■□□□□ 0.57
COL5A1P20908 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A1P20908 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.61■□□□□ 0.57
COL5A1P20908 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.61■□□□□ 0.57
COL5A1P20908 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL5A1P20908 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.61■□□□□ 0.57
COL5A1P20908 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.61■□□□□ 0.57
COL5A1P20908 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL5A1P20908 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A1P20908 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A1P20908 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A1P20908 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A1P20908 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A1P20908 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL5A1P20908 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL5A1P20908 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL5A1P20908 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A1P20908 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL5A1P20908 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A1P20908 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.6■□□□□ 0.57
COL5A1P20908 HBZP1-201ENST00000354915 429 ntBASIC18.6■□□□□ 0.57
COL5A1P20908 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A1P20908 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A1P20908 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A1P20908 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
COL5A1P20908 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.6■□□□□ 0.57
COL5A1P20908 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.6■□□□□ 0.57
COL5A1P20908 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.6■□□□□ 0.57
COL5A1P20908 NPAP1P7-201ENST00000613027 823 ntBASIC18.6■□□□□ 0.57
COL5A1P20908 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL5A1P20908 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL5A1P20908 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A1P20908 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A1P20908 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A1P20908 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.6■□□□□ 0.57
COL5A1P20908 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A1P20908 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A1P20908 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL5A1P20908 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A1P20908 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.6■□□□□ 0.57
COL5A1P20908 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.6■□□□□ 0.57
COL5A1P20908 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL5A1P20908 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.6■□□□□ 0.57
COL5A1P20908 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A1P20908 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.6■□□□□ 0.57
COL5A1P20908 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A1P20908 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A1P20908 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
COL5A1P20908 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.59■□□□□ 0.57
COL5A1P20908 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
COL5A1P20908 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.59■□□□□ 0.57
COL5A1P20908 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.59■□□□□ 0.57
COL5A1P20908 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
COL5A1P20908 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.59■□□□□ 0.57
COL5A1P20908 AC140113.3-201ENST00000605663 199 ntBASIC18.59■□□□□ 0.57
COL5A1P20908 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.59■□□□□ 0.57
COL5A1P20908 AL512408.1-201ENST00000569378 2000 ntBASIC18.59■□□□□ 0.57
COL5A1P20908 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A1P20908 LINC01465-201ENST00000408887 1940 ntBASIC18.59■□□□□ 0.57
COL5A1P20908 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A1P20908 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A1P20908 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.58■□□□□ 0.57
COL5A1P20908 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A1P20908 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A1P20908 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.58■□□□□ 0.57
COL5A1P20908 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A1P20908 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A1P20908 AL157384.1-201ENST00000445995 2473 ntBASIC18.58■□□□□ 0.57
COL5A1P20908 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.58■□□□□ 0.57
COL5A1P20908 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
COL5A1P20908 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A1P20908 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
COL5A1P20908 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A1P20908 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A1P20908 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A1P20908 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.58■□□□□ 0.56
COL5A1P20908 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A1P20908 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A1P20908 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A1P20908 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A1P20908 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
COL5A1P20908 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A1P20908 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A1P20908 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A1P20908 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A1P20908 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A1P20908 AC026396.1-201ENST00000419388 421 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms