Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 AC116407.3-201ENST00000623905 1129 ntBASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 KRT16P6-202ENST00000425692 1426 ntBASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 IGHV3-47-201ENST00000425060 335 ntBASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 HLA-F-220ENST00000434407 884 ntBASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC85CA6NKD9 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 MIR4674-201ENST00000582457 87 ntBASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC85CA6NKD9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 SEC1P-202ENST00000473944 940 ntBASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC85CA6NKD9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 Z83836.1-201ENST00000624605 1642 ntBASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 MIR770-201ENST00000390219 98 ntBASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 IMP4-203ENST00000409935 958 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 AL136038.4-201ENST00000603606 1261 ntBASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 AL355877.3-201ENST00000622820 899 ntBASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC85CA6NKD9 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 PON3-203ENST00000427422 894 ntTSL 3 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 FAM215A-202ENST00000632077 792 ntBASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC85CA6NKD9 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
CCDC85CA6NKD9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
CCDC85CA6NKD9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms