Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC26.08■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC116351.2-201ENST00000606540 1585 ntBASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC120498.8-201ENST00000614275 531 ntBASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TFP1-202ENST00000475455 1573 ntBASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 LINC01465-201ENST00000408887 1940 ntBASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC005332.7-201ENST00000614046 2005 ntBASIC26.04■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC26.03■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms