Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 MTCYBP45-201ENST00000435243 565 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AL512286.1-201ENST00000439244 400 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC073465.2-201ENST00000440938 498 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC245028.2-201ENST00000458673 253 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC021660.1-201ENST00000465006 554 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 MTND1P16-201ENST00000465177 898 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 UBFD1P1-201ENST00000473259 814 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 DUTP7-201ENST00000507982 486 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 HMGB1P42-201ENST00000532126 553 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC122688.1-201ENST00000541494 223 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 CR383656.6-201ENST00000550518 394 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 ARL2BPP2-201ENST00000550907 489 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC007151.1-201ENST00000572774 483 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 SUMO2P14-201ENST00000604488 293 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AL499605.1-201ENST00000604628 403 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC120349.2-201ENST00000625002 298 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 OR52B5P-202ENST00000641118 1110 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 KARSP1-201ENST00000451871 1752 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC025574.1-201ENST00000554784 1653 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AC079298.1-201ENST00000625026 1619 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 AL078621.3-201ENST00000623707 2042 ntBASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC39Q9UFE4 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC106872.5-201ENST00000508856 1416 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC017007.4-201ENST00000503353 1352 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 Y_RNA.89-201ENST00000363031 102 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 RNU6-660P-201ENST00000364566 109 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 FIG4-202ENST00000368941 791 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 GNG5P5-201ENST00000420444 220 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC009237.2-201ENST00000421358 284 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC073464.1-201ENST00000429823 534 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 RPS4XP4-201ENST00000443195 763 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 PDLIM1P4-201ENST00000504327 1006 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 OR5M14P-201ENST00000506803 618 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC016559.2-201ENST00000510759 359 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 OR7K1P-201ENST00000546439 926 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC079600.1-201ENST00000550326 297 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AL121821.2-201ENST00000556081 394 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC040958.1-201ENST00000561102 201 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 SNORD39.2-201ENST00000579995 76 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 H3F3BP2-201ENST00000583907 357 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 MIR3936-201ENST00000584304 110 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AL359535.1-201ENST00000612100 1087 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AL096712.1-201ENST00000614561 159 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC073348.1-201ENST00000623002 331 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC112198.2-201ENST00000426589 6996 ntBASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC39Q9UFE4 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.34□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms