Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AL356131.1-201ENST00000405826 414 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 Y_RNA.604-201ENST00000410574 102 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC234779.1-201ENST00000425910 285 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AL035407.1-201ENST00000429211 571 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 H2AFZP5-201ENST00000446960 382 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 NPM1P13-201ENST00000452663 865 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 RPL7AP10-201ENST00000481016 791 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC134698.5-201ENST00000519444 336 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC084783.1-201ENST00000565846 910 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 NTAN1P1-201ENST00000603150 646 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC107304.1-201ENST00000604229 296 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC092354.2-201ENST00000607786 514 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC104073.3-201ENST00000610942 955 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AL355073.2-201ENST00000612106 557 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC022079.2-201ENST00000619739 566 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC123767.1-202ENST00000620407 817 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC131159.1-201ENST00000621854 213 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC084035.1-201ENST00000634543 607 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 LINC01109-201ENST00000603837 3081 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC005332.5-201ENST00000591222 2919 ntBASIC4.84□□□□□ -1.63
EBF3Q9H4W6 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
EBF3Q9H4W6 AC027228.2-201ENST00000567141 2154 ntBASIC4.84□□□□□ -1.64
EBF3Q9H4W6 ZNF137P-201ENST00000456718 1920 ntBASIC4.84□□□□□ -1.64
EBF3Q9H4W6 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC000123.3-201ENST00000624029 4975 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 ELL2P3-201ENST00000457883 1602 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 OR56B2P-202ENST00000641377 2453 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC104454.1-201ENST00000421341 1401 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 RNU4-75P-201ENST00000364621 146 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 SNORA71.2-201ENST00000364941 134 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AP000580.1-201ENST00000404439 358 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AL008987.1-201ENST00000415528 237 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 TRGV6-201ENST00000417928 299 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 HMGB1P49-201ENST00000418882 569 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 CKS1BP6-201ENST00000424932 240 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC000041.1-201ENST00000439655 175 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 RPS27AP8-201ENST00000452665 445 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC009963.2-201ENST00000453431 138 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC008280.2-201ENST00000455473 307 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AL161747.1-201ENST00000480068 358 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 RPL21P131-201ENST00000497298 483 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC025674.1-201ENST00000507074 324 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 RNU6-1129P-201ENST00000515964 104 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 SNORA3.4-201ENST00000515969 96 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 RN7SKP34-201ENST00000516142 244 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AP000926.4-201ENST00000527351 454 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC084824.1-201ENST00000550917 1005 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC024909.2-201ENST00000553035 286 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AL049830.4-201ENST00000555149 351 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC068831.4-201ENST00000556118 109 ntBASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
EBF3Q9H4W6 AC069366.1-201ENST00000583159 838 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms