Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
NKX3-1Q99801 RN7SL722P-201ENST00000617780 284 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 RN7SL565P-201ENST00000618246 284 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC010975.3-201ENST00000618727 978 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AL121895.2-201ENST00000619558 447 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AP000770.2-201ENST00000623694 100 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AC009452.1-201ENST00000640823 606 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
NKX3-1Q99801 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
NKX3-1Q99801 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
NKX3-1Q99801 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
NKX3-1Q99801 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 AL355578.1-201ENST00000607405 1328 ntBASIC3.95□□□□□ -1.78
NKX3-1Q99801 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
NKX3-1Q99801 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
NKX3-1Q99801 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC019155.1-201ENST00000382242 574 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 RNU1-63P-201ENST00000383902 164 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 RPL21P108-201ENST00000413857 481 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 OR2X1P-201ENST00000421144 687 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AL009174.1-201ENST00000426577 416 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 RAC1P8-201ENST00000427086 527 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 HIGD1AP12-201ENST00000427832 281 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 HMGB3P5-201ENST00000428894 612 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 USP9YP24-201ENST00000434374 697 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 NANOGP2-201ENST00000435391 727 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 USP9YP17-201ENST00000444617 696 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 GEMIN8P3-201ENST00000445417 720 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NKX3-1Q99801 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NKX3-1Q99801 PTGES3P5-201ENST00000455109 434 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 BX248409.1-201ENST00000455497 255 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC090013.1-201ENST00000485147 480 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 RPL21P131-201ENST00000497298 483 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 PGBD4P4-201ENST00000509673 613 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 MAL2-201ENST00000522112 573 ntTSL 4 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 VN1R88P-201ENST00000596787 292 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC073091.2-201ENST00000603205 907 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 MTND3P19-201ENST00000603825 345 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC098935.2-201ENST00000604222 466 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC002487.1-201ENST00000604565 994 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC008966.2-201ENST00000606157 453 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC090948.2-201ENST00000607363 564 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AL355816.1-201ENST00000607951 118 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 AP000238.1-201ENST00000608759 426 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AC116447.1-201ENST00000613153 453 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 CR381572.2-201ENST00000624852 397 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 CR392039.4-201ENST00000624968 501 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
NKX3-1Q99801 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NKX3-1Q99801 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
NKX3-1Q99801 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
NKX3-1Q99801 MFSD8-220ENST00000641243 1422 ntBASIC3.94□□□□□ -1.78
NKX3-1Q99801 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
NKX3-1Q99801 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
NKX3-1Q99801 SDAD1P1-202ENST00000524156 2051 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 MTND4P10-201ENST00000446199 1363 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NKX3-1Q99801 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC067945.1-201ENST00000342609 618 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NKX3-1Q99801 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms