Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL133173.2-201ENST00000614270 90 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC024884.1-201ENST00000620583 399 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC112204.3-201ENST00000623822 332 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC024614.3-201ENST00000637860 256 ntBASIC5.62□□□□□ -1.51
RNF4P78317 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
RNF4P78317 AC025574.1-201ENST00000554784 1653 ntBASIC5.62□□□□□ -1.51
RNF4P78317 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
RNF4P78317 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
RNF4P78317 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
RNF4P78317 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
RNF4P78317 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 AL121839.2-201ENST00000565058 6943 ntBASIC5.62□□□□□ -1.51
RNF4P78317 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 Y_RNA.159-201ENST00000363674 87 ntBASIC5.61□□□□□ -1.51
RNF4P78317 LCN1P2-201ENST00000372030 223 ntBASIC5.61□□□□□ -1.51
RNF4P78317 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 EIF5P1-201ENST00000400019 1231 ntBASIC5.61□□□□□ -1.51
RNF4P78317 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 RNU6-908P-201ENST00000410160 94 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.61□□□□□ -1.51
RNF4P78317 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC5.61□□□□□ -1.51
RNF4P78317 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 GTF2IP20-201ENST00000431663 360 ntBASIC5.61□□□□□ -1.51
RNF4P78317 OR52B5P-201ENST00000435337 951 ntBASIC5.61□□□□□ -1.51
RNF4P78317 RPL12P18-201ENST00000437175 325 ntBASIC5.61□□□□□ -1.51
RNF4P78317 HMGB3P12-201ENST00000438745 556 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.61□□□□□ -1.51
RNF4P78317 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.61□□□□□ -1.51
RNF4P78317 HMGN1P2-201ENST00000445197 310 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AC007677.1-201ENST00000445757 515 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AC005077.1-201ENST00000449226 375 ntBASIC5.61□□□□□ -1.51
RNF4P78317 SNRPGP6-201ENST00000451124 220 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 RPL7AP10-201ENST00000481016 791 ntBASIC5.61□□□□□ -1.51
RNF4P78317 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.61□□□□□ -1.51
RNF4P78317 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 AC083795.1-201ENST00000491760 320 ntBASIC5.61□□□□□ -1.51
RNF4P78317 EIF3LP3-201ENST00000495197 822 ntBASIC5.61□□□□□ -1.51
RNF4P78317 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 RNA5SP340-201ENST00000517132 107 ntBASIC5.61□□□□□ -1.51
RNF4P78317 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.61□□□□□ -1.51
RNF4P78317 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC5.61□□□□□ -1.51
RNF4P78317 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 AC125611.2-201ENST00000551907 647 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AC122134.1-201ENST00000565664 1104 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.61□□□□□ -1.51
RNF4P78317 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.61□□□□□ -1.51
RNF4P78317 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.61□□□□□ -1.51
RNF4P78317 COX6CP4-201ENST00000605798 228 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 AC243654.2-201ENST00000612843 443 ntBASIC5.61□□□□□ -1.51
RNF4P78317 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 MIR6778-201ENST00000617912 73 ntBASIC5.61□□□□□ -1.51
RNF4P78317 AP006248.2-201ENST00000623309 592 ntBASIC5.61□□□□□ -1.51
RNF4P78317 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
RNF4P78317 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
RNF4P78317 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.61□□□□□ -1.51
RNF4P78317 AC005725.1-201ENST00000577346 2607 ntBASIC5.61□□□□□ -1.51
RNF4P78317 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
RNF4P78317 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.6□□□□□ -1.51
RNF4P78317 GNL2P1-201ENST00000451274 2190 ntBASIC5.6□□□□□ -1.51
RNF4P78317 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 AC134882.1-201ENST00000603738 1676 ntBASIC5.6□□□□□ -1.51
RNF4P78317 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.6□□□□□ -1.51
RNF4P78317 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.6□□□□□ -1.51
RNF4P78317 RBPJP7-201ENST00000442803 1447 ntBASIC5.6□□□□□ -1.51
RNF4P78317 RBPJP5-201ENST00000449433 1447 ntBASIC5.6□□□□□ -1.51
RNF4P78317 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
RNF4P78317 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.6□□□□□ -1.51
RNF4P78317 OR52B1P-201ENST00000316506 909 ntBASIC5.6□□□□□ -1.51
RNF4P78317 OR10R3P-201ENST00000361688 942 ntBASIC5.6□□□□□ -1.51
RNF4P78317 Y_RNA.142-201ENST00000363491 102 ntBASIC5.6□□□□□ -1.51
RNF4P78317 RNU6-343P-201ENST00000364709 104 ntBASIC5.6□□□□□ -1.51
RNF4P78317 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms