Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.45
CUX1P39880 AC120036.2-201ENST00000509729 1474 ntBASIC5.96□□□□□ -1.45
CUX1P39880 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.96□□□□□ -1.45
CUX1P39880 RPL23AP57-201ENST00000332361 466 ntBASIC5.96□□□□□ -1.46
CUX1P39880 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.96□□□□□ -1.46
CUX1P39880 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC5.96□□□□□ -1.46
CUX1P39880 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.96□□□□□ -1.46
CUX1P39880 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.96□□□□□ -1.46
CUX1P39880 PTGES3P3-201ENST00000511479 482 ntBASIC5.96□□□□□ -1.46
CUX1P39880 TCP11X3P-202ENST00000514289 1254 ntBASIC5.96□□□□□ -1.46
CUX1P39880 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.96□□□□□ -1.46
CUX1P39880 MIR5680-201ENST00000577577 84 ntBASIC5.96□□□□□ -1.46
CUX1P39880 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC5.96□□□□□ -1.46
CUX1P39880 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC5.96□□□□□ -1.46
CUX1P39880 AC026422.1-201ENST00000623961 452 ntBASIC5.96□□□□□ -1.46
CUX1P39880 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC5.96□□□□□ -1.46
CUX1P39880 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.46
CUX1P39880 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CUX1P39880 NCOA4P2-201ENST00000340589 1813 ntBASIC5.96□□□□□ -1.46
CUX1P39880 MTCO1P46-201ENST00000451639 1491 ntBASIC5.96□□□□□ -1.46
CUX1P39880 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CUX1P39880 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.95□□□□□ -1.46
CUX1P39880 RNA5SP197-201ENST00000363357 119 ntBASIC5.95□□□□□ -1.46
CUX1P39880 UBA52P6-201ENST00000399822 382 ntBASIC5.95□□□□□ -1.46
CUX1P39880 AL031121.1-201ENST00000406553 254 ntBASIC5.95□□□□□ -1.46
CUX1P39880 NAP1L1P2-201ENST00000414182 1089 ntBASIC5.95□□□□□ -1.46
CUX1P39880 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC5.95□□□□□ -1.46
CUX1P39880 AC109458.1-201ENST00000508858 316 ntBASIC5.95□□□□□ -1.46
CUX1P39880 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC5.95□□□□□ -1.46
CUX1P39880 SUMO2P20-201ENST00000520803 283 ntBASIC5.95□□□□□ -1.46
CUX1P39880 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CUX1P39880 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.95□□□□□ -1.46
CUX1P39880 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC5.95□□□□□ -1.46
CUX1P39880 AC124312.4-201ENST00000605533 310 ntBASIC5.95□□□□□ -1.46
CUX1P39880 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.95□□□□□ -1.46
CUX1P39880 AC135507.2-201ENST00000612443 309 ntBASIC5.95□□□□□ -1.46
CUX1P39880 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CUX1P39880 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CUX1P39880 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CUX1P39880 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CUX1P39880 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CUX1P39880 FRG1CP-201ENST00000358464 769 ntBASIC5.94□□□□□ -1.46
CUX1P39880 SNORA38.1-201ENST00000364172 131 ntBASIC5.94□□□□□ -1.46
CUX1P39880 HLFP1-201ENST00000402375 499 ntBASIC5.94□□□□□ -1.46
CUX1P39880 SAGE2P-201ENST00000420011 2126 ntBASIC5.94□□□□□ -1.46
CUX1P39880 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 IGKV2-26-201ENST00000518305 343 ntBASIC5.94□□□□□ -1.46
CUX1P39880 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.94□□□□□ -1.46
CUX1P39880 AC027281.1-201ENST00000574178 758 ntBASIC5.94□□□□□ -1.46
CUX1P39880 AC067852.3-201ENST00000589177 561 ntBASIC5.94□□□□□ -1.46
CUX1P39880 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
CUX1P39880 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
CUX1P39880 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CUX1P39880 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC5.94□□□□□ -1.46
CUX1P39880 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC5.94□□□□□ -1.46
CUX1P39880 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CUX1P39880 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.94□□□□□ -1.46
CUX1P39880 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CUX1P39880 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CUX1P39880 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 AC020893.1-201ENST00000502452 580 ntBASIC5.94□□□□□ -1.46
CUX1P39880 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.94□□□□□ -1.46
CUX1P39880 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 UBE2NP1-201ENST00000545592 458 ntBASIC5.94□□□□□ -1.46
CUX1P39880 AC011611.1-201ENST00000552179 197 ntBASIC5.94□□□□□ -1.46
CUX1P39880 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 CKS1BP3-201ENST00000600888 237 ntBASIC5.94□□□□□ -1.46
CUX1P39880 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.94□□□□□ -1.46
CUX1P39880 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CUX1P39880 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CUX1P39880 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CUX1P39880 AC011266.1-201ENST00000624119 3569 ntBASIC5.93□□□□□ -1.46
CUX1P39880 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.93□□□□□ -1.46
CUX1P39880 AC096638.2-201ENST00000434965 711 ntBASIC5.93□□□□□ -1.46
CUX1P39880 AC098824.1-201ENST00000453565 980 ntBASIC5.93□□□□□ -1.46
CUX1P39880 AC080014.1-201ENST00000496877 1201 ntBASIC5.93□□□□□ -1.46
CUX1P39880 HMGB1P21-201ENST00000502313 581 ntBASIC5.93□□□□□ -1.46
CUX1P39880 RNU6-579P-201ENST00000516879 102 ntBASIC5.93□□□□□ -1.46
CUX1P39880 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC5.93□□□□□ -1.46
CUX1P39880 OR7A8P-201ENST00000595427 913 ntBASIC5.93□□□□□ -1.46
CUX1P39880 OR7M1P-201ENST00000608946 533 ntBASIC5.93□□□□□ -1.46
CUX1P39880 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
CUX1P39880 AC092435.4-201ENST00000623012 4159 ntBASIC5.93□□□□□ -1.46
CUX1P39880 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CUX1P39880 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.92□□□□□ -1.46
CUX1P39880 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CUX1P39880 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CUX1P39880 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CUX1P39880 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC5.92□□□□□ -1.46
CUX1P39880 MTHFD2P2-201ENST00000407725 247 ntBASIC5.92□□□□□ -1.46
CUX1P39880 RN7SKP199-201ENST00000410325 305 ntBASIC5.92□□□□□ -1.46
CUX1P39880 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.92□□□□□ -1.46
CUX1P39880 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.92□□□□□ -1.46
CUX1P39880 HSPE1P27-201ENST00000430808 296 ntBASIC5.92□□□□□ -1.46
CUX1P39880 ELOCP8-201ENST00000439309 332 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms