Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL354760.1-201ENST00000608357 643 ntBASIC3.62□□□□□ -1.83
VCANP13611 AC234782.5-201ENST00000617723 324 ntBASIC3.62□□□□□ -1.83
VCANP13611 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC3.62□□□□□ -1.83
VCANP13611 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC3.62□□□□□ -1.83
VCANP13611 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
VCANP13611 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
VCANP13611 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VCANP13611 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VCANP13611 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
VCANP13611 DBIP2-201ENST00000419076 262 ntBASIC3.62□□□□□ -1.83
VCANP13611 AL139281.1-201ENST00000422120 335 ntBASIC3.62□□□□□ -1.83
VCANP13611 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC3.62□□□□□ -1.83
VCANP13611 TPTE2P3-201ENST00000441562 1189 ntBASIC3.62□□□□□ -1.83
VCANP13611 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC3.62□□□□□ -1.83
VCANP13611 AC104662.1-201ENST00000604448 511 ntBASIC3.62□□□□□ -1.83
VCANP13611 AC058791.1-201ENST00000608412 3198 ntBASIC3.62□□□□□ -1.83
VCANP13611 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.61□□□□□ -1.83
VCANP13611 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
VCANP13611 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VCANP13611 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VCANP13611 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.61□□□□□ -1.83
VCANP13611 HMGN2P7-201ENST00000456186 273 ntBASIC3.61□□□□□ -1.83
VCANP13611 AC109925.1-201ENST00000478069 331 ntBASIC3.61□□□□□ -1.83
VCANP13611 AC026801.2-201ENST00000515352 425 ntBASIC3.61□□□□□ -1.83
VCANP13611 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
VCANP13611 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VCANP13611 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VCANP13611 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.61□□□□□ -1.83
VCANP13611 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VCANP13611 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.61□□□□□ -1.83
VCANP13611 NPM1P25-201ENST00000429734 854 ntBASIC3.61□□□□□ -1.83
VCANP13611 AC140076.1-201ENST00000449897 361 ntBASIC3.61□□□□□ -1.83
VCANP13611 U3.44-201ENST00000458938 192 ntBASIC3.61□□□□□ -1.83
VCANP13611 RN7SL863P-201ENST00000462370 296 ntBASIC3.61□□□□□ -1.83
VCANP13611 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.61□□□□□ -1.83
VCANP13611 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.61□□□□□ -1.83
VCANP13611 AL358913.1-201ENST00000554342 121 ntBASIC3.61□□□□□ -1.83
VCANP13611 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC3.61□□□□□ -1.83
VCANP13611 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.61□□□□□ -1.83
VCANP13611 AC098826.3-201ENST00000603823 466 ntBASIC3.61□□□□□ -1.83
VCANP13611 AC025754.2-201ENST00000606491 432 ntBASIC3.61□□□□□ -1.83
VCANP13611 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.61□□□□□ -1.83
VCANP13611 AL121839.2-201ENST00000565058 6943 ntBASIC3.61□□□□□ -1.83
VCANP13611 AC104446.1-201ENST00000613728 1321 ntBASIC3.61□□□□□ -1.83
VCANP13611 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
VCANP13611 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VCANP13611 AC092435.4-201ENST00000623012 4159 ntBASIC3.6□□□□□ -1.83
VCANP13611 AL357075.1-201ENST00000404107 726 ntBASIC3.6□□□□□ -1.83
VCANP13611 NPM1P5-201ENST00000557228 838 ntBASIC3.6□□□□□ -1.83
VCANP13611 IGHVIII-44-202ENST00000636235 289 ntBASIC3.6□□□□□ -1.83
VCANP13611 AP000553.6-201ENST00000641242 118 ntBASIC3.6□□□□□ -1.83
VCANP13611 A2MP1-204ENST00000566278 4130 ntBASIC3.6□□□□□ -1.83
VCANP13611 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
VCANP13611 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VCANP13611 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.6□□□□□ -1.83
VCANP13611 RPL23AP25-201ENST00000430973 463 ntBASIC3.6□□□□□ -1.83
VCANP13611 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.6□□□□□ -1.83
VCANP13611 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.6□□□□□ -1.83
VCANP13611 RPS4XP13-201ENST00000483219 789 ntBASIC3.6□□□□□ -1.83
VCANP13611 AL034351.1-201ENST00000605288 668 ntBASIC3.6□□□□□ -1.83
VCANP13611 AP003355.3-201ENST00000623465 114 ntBASIC3.6□□□□□ -1.83
VCANP13611 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.6□□□□□ -1.83
VCANP13611 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VCANP13611 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VCANP13611 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 FAM133CP-201ENST00000332869 704 ntBASIC3.6□□□□□ -1.83
VCANP13611 AC067945.1-201ENST00000342609 618 ntBASIC3.6□□□□□ -1.83
VCANP13611 HMGN1P24-201ENST00000412282 298 ntBASIC3.6□□□□□ -1.83
VCANP13611 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.6□□□□□ -1.83
VCANP13611 AK5-208ENST00000478255 556 ntTSL 2 BASIC3.6□□□□□ -1.83
VCANP13611 RPL7P47-201ENST00000497299 556 ntBASIC3.6□□□□□ -1.83
VCANP13611 AC063950.1-201ENST00000552036 308 ntBASIC3.6□□□□□ -1.83
VCANP13611 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.6□□□□□ -1.83
VCANP13611 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC3.6□□□□□ -1.83
VCANP13611 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCANP13611 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
VCANP13611 Y_RNA.508-201ENST00000384502 114 ntBASIC3.59□□□□□ -1.83
VCANP13611 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC3.59□□□□□ -1.83
VCANP13611 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.59□□□□□ -1.83
VCANP13611 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.59□□□□□ -1.83
VCANP13611 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.59□□□□□ -1.83
VCANP13611 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.59□□□□□ -1.83
VCANP13611 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.59□□□□□ -1.83
VCANP13611 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
VCANP13611 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VCANP13611 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VCANP13611 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC3.59□□□□□ -1.83
VCANP13611 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VCANP13611 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms