Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 UBE2D3P2-201ENST00000424409 445 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC091390.2-201ENST00000432573 374 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 OR4C10P-201ENST00000434991 931 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 DEFA11P-201ENST00000446470 261 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AL035551.1-201ENST00000446931 348 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 RPS15AP27-201ENST00000449183 343 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 RPL23AP71-201ENST00000470966 469 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AL161747.1-201ENST00000480068 358 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 RN7SL797P-201ENST00000486314 297 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 LINC01085-203ENST00000511195 326 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 RNU6-1069P-201ENST00000516612 133 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC060771.1-201ENST00000582031 164 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 VN1R91P-201ENST00000594377 169 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC245517.5-201ENST00000611529 162 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC055839.1-201ENST00000634467 498 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC112255.1-201ENST00000624070 2493 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 AC005614.1-201ENST00000598952 3653 ntBASIC7.19□□□□□ -1.26
VPS9D1Q9Y2B5 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 Y_RNA.8-201ENST00000362353 102 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 RNU4-7P-201ENST00000364758 141 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 ARMCX7P-201ENST00000372828 562 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 RNU6-842P-201ENST00000384269 107 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 SNORA22C-201ENST00000384614 134 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 MIR1204-201ENST00000408388 67 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 RNU6-121P-201ENST00000410525 99 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC097713.2-201ENST00000430199 356 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 RPL23AP69-201ENST00000431134 458 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 CBX1P2-201ENST00000453841 458 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 DYNLL1P5-201ENST00000467158 270 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 RPL7P6-201ENST00000480903 738 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC098869.1-201ENST00000481627 292 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 RN7SL809P-201ENST00000482040 297 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC092375.1-201ENST00000550410 637 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC092718.4-201ENST00000566639 716 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 EEF1B2P1-201ENST00000567221 672 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AL117339.4-201ENST00000608335 7063 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 AC138915.4-201ENST00000565549 4147 ntBASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 THAP9-201ENST00000302236 3808 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
VPS9D1Q9Y2B5 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 AL157713.1-201ENST00000379752 1531 ntBASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 AC134882.1-201ENST00000603738 1676 ntBASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 RNU6-1266P-201ENST00000362794 105 ntBASIC7.17□□□□□ -1.26
VPS9D1Q9Y2B5 RNU6-1017P-201ENST00000363613 106 ntBASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms