Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR708-201ENST00000390708 88 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 RNU2-6P-201ENST00000411404 190 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 NRBF2P2-201ENST00000413087 861 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC114495.1-201ENST00000441274 436 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 RPS7P5-201ENST00000441482 581 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 RPS27P5-201ENST00000444247 244 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AL645939.1-201ENST00000453429 797 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 RN7SKP283-201ENST00000517197 270 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 TVP23BP1-201ENST00000557500 617 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC026979.4-201ENST00000606555 645 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AL353600.1-201ENST00000608148 251 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC003001.2-201ENST00000616294 831 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AC234782.5-201ENST00000617723 324 ntBASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.4□□□□□ -1.71
HDDC3Q8N4P3 MAPK10-303ENST00000641324 3959 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 RNU6-252P-201ENST00000363232 107 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 VN1R32P-201ENST00000452234 905 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AL035404.1-201ENST00000497982 568 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 OR5BC1P-201ENST00000529327 739 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AC053481.3-201ENST00000577881 843 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 NTAN1P1-201ENST00000603150 646 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AC083899.3-201ENST00000603413 594 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AP003117.2-201ENST00000606010 545 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 MIR8059-201ENST00000620427 81 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 FRG1DP-201ENST00000635586 771 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AL596275.2-204ENST00000641628 552 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AL596275.2-206ENST00000641957 626 ntBASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HDDC3Q8N4P3 AC025125.1-201ENST00000624743 1922 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP175-201ENST00000364275 119 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP513-201ENST00000364648 118 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP283-201ENST00000365604 119 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP372-201ENST00000390836 115 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 PTMAP2-201ENST00000397627 327 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 HMGB3P18-201ENST00000406327 590 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC009237.10-201ENST00000414112 510 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC008065.1-201ENST00000428525 348 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 NPM1P34-201ENST00000428821 893 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AL358232.1-201ENST00000448030 501 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 DDX39BP2-208ENST00000453923 258 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 RN7SL542P-201ENST00000467147 294 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC022795.1-201ENST00000473808 480 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 AC108729.2-201ENST00000476543 840 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 RPL35P6-201ENST00000490024 372 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 PRELID3BP7-201ENST00000503606 469 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.38□□□□□ -1.71
HDDC3Q8N4P3 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms