Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC007497.1-201ENST00000610421 561 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
USP39Q53GS9 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
USP39Q53GS9 VPS35P1-201ENST00000563400 1518 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP39Q53GS9 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.37□□□□□ -1.55
USP39Q53GS9 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 MIR133A2-201ENST00000347538 102 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 MIR600-201ENST00000385007 98 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 OR4K12P-201ENST00000406538 961 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 FAR2P2-201ENST00000413041 594 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.37□□□□□ -1.55
USP39Q53GS9 AL109913.1-201ENST00000421173 514 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 FAR2P4-202ENST00000425399 584 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.37□□□□□ -1.55
USP39Q53GS9 MTND1P14-201ENST00000427400 950 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 ATP5F1P1-201ENST00000433775 569 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 AC093155.1-201ENST00000440164 826 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.37□□□□□ -1.55
USP39Q53GS9 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC5.37□□□□□ -1.55
USP39Q53GS9 RPL31P44-201ENST00000447680 377 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 MTND5P20-201ENST00000448677 143 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 TPT1P13-201ENST00000449760 499 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 NPM1P39-201ENST00000449818 867 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.37□□□□□ -1.55
USP39Q53GS9 HMGB1P5-202ENST00000451497 985 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.37□□□□□ -1.55
USP39Q53GS9 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 AZGP1P2-201ENST00000454506 345 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.37□□□□□ -1.55
USP39Q53GS9 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.37□□□□□ -1.55
USP39Q53GS9 RPL7P18-201ENST00000478965 734 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.37□□□□□ -1.55
USP39Q53GS9 ARL2BPP4-201ENST00000506854 471 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC5.37□□□□□ -1.55
USP39Q53GS9 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 MIR5708-201ENST00000579723 85 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.37□□□□□ -1.55
USP39Q53GS9 AC092354.1-201ENST00000606057 376 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 AL592494.3-201ENST00000609485 464 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 AC073569.3-201ENST00000619055 682 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 AC012150.2-201ENST00000621300 544 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.37□□□□□ -1.55
USP39Q53GS9 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 THAP12P4-201ENST00000528321 2266 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 INTS6P1-201ENST00000504674 2530 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
USP39Q53GS9 ABCC13-202ENST00000463099 3842 ntBASIC5.37□□□□□ -1.55
USP39Q53GS9 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP39Q53GS9 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 MUC2-202ENST00000613187 4845 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AC010132.2-201ENST00000295493 1043 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP39Q53GS9 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.36□□□□□ -1.55
USP39Q53GS9 RNU2-41P-201ENST00000410991 178 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 HMGN1P14-201ENST00000412459 517 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 MTATP6P27-201ENST00000416987 621 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC5.36□□□□□ -1.55
USP39Q53GS9 OFD1P2Y-201ENST00000421895 1149 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 MTCO3P1-205ENST00000422088 832 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 RIMKLBP2-201ENST00000424737 654 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 ISCA1P1-201ENST00000426679 387 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AL360081.1-201ENST00000428299 555 ntBASIC5.36□□□□□ -1.55
USP39Q53GS9 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.36□□□□□ -1.55
USP39Q53GS9 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC5.36□□□□□ -1.55
USP39Q53GS9 AC092324.1-201ENST00000468671 324 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms