Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PPIAP22-201ENST00000358455 498 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 MIR323A-201ENST00000362199 86 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 RNU6-490P-201ENST00000362985 107 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
COL8A1P27658 RNU6-328P-201ENST00000390887 106 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 UBE2V1P14-201ENST00000415815 558 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.9□□□□□ -1.46
COL8A1P27658 COX6CP15-201ENST00000426313 211 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 PSMA6P3-201ENST00000428242 164 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 RPSAP65-201ENST00000429660 595 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC5.9□□□□□ -1.46
COL8A1P27658 MTCO3P29-201ENST00000432119 779 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC5.9□□□□□ -1.46
COL8A1P27658 OR13K1P-201ENST00000444577 975 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.9□□□□□ -1.46
COL8A1P27658 IGKV1OR-3-201ENST00000446944 348 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC009963.3-201ENST00000458090 486 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC104849.1-201ENST00000462623 405 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC090142.1-201ENST00000465776 462 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.9□□□□□ -1.46
COL8A1P27658 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.9□□□□□ -1.46
COL8A1P27658 CR383656.1-201ENST00000484916 377 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.9□□□□□ -1.46
COL8A1P27658 SNORD27.1-201ENST00000516319 72 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 RNU6-714P-201ENST00000516963 103 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 RNU6-699P-201ENST00000517081 110 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 RN7SKP35-201ENST00000517210 151 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.9□□□□□ -1.46
COL8A1P27658 HMGB1P23-201ENST00000518743 568 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 IGHV3-76-201ENST00000522465 295 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC022616.4-201ENST00000522985 181 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.9□□□□□ -1.46
COL8A1P27658 OR5D17P-201ENST00000531492 978 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.9□□□□□ -1.46
COL8A1P27658 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 AC026956.1-201ENST00000558741 396 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 ULK4P1-202ENST00000565174 503 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.9□□□□□ -1.46
COL8A1P27658 AC006557.5-201ENST00000603126 811 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC004792.1-201ENST00000614523 137 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC103858.2-201ENST00000621471 543 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 MIR6719-201ENST00000622428 87 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC099667.1-201ENST00000624222 469 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 U6.104-201ENST00000637979 90 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AL732372.2-225ENST00000642124 456 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
COL8A1P27658 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC5.9□□□□□ -1.47
COL8A1P27658 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC5.9□□□□□ -1.47
COL8A1P27658 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.9□□□□□ -1.47
COL8A1P27658 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
COL8A1P27658 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.9□□□□□ -1.47
COL8A1P27658 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL8A1P27658 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.89□□□□□ -1.47
COL8A1P27658 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL8A1P27658 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL8A1P27658 RMST-210ENST00000640149 2844 ntTSL 5 BASIC5.89□□□□□ -1.47
COL8A1P27658 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC5.89□□□□□ -1.47
COL8A1P27658 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL8A1P27658 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL8A1P27658 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL8A1P27658 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL8A1P27658 RNA5SP321-201ENST00000362722 111 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 SNORD3E-201ENST00000362899 217 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL8A1P27658 Y_RNA.428-201ENST00000384078 102 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 Y_RNA.462-201ENST00000384268 102 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 Y_RNA.483-201ENST00000384380 101 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 RNU6-125P-201ENST00000384505 107 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 SNORA75.6-201ENST00000391318 127 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 AL360182.1-201ENST00000397433 468 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 RPL21P1-201ENST00000399532 476 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.89□□□□□ -1.47
COL8A1P27658 MIR1178-201ENST00000408396 91 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 RNA5SP345-201ENST00000410646 108 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 GJA6P-201ENST00000415117 1042 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.89□□□□□ -1.47
COL8A1P27658 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL8A1P27658 FTH1P5-201ENST00000425761 545 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 RPS10P21-201ENST00000430654 475 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 PNKDP1-201ENST00000435914 430 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 AC096775.1-201ENST00000437724 448 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC5.89□□□□□ -1.47
COL8A1P27658 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.89□□□□□ -1.47
COL8A1P27658 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC5.89□□□□□ -1.47
COL8A1P27658 OR52I1-201ENST00000450052 1050 ntBASIC5.89□□□□□ -1.47
COL8A1P27658 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms