Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A1P02462 SNORD74.4-201ENST00000364129 80 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 AC109458.1-201ENST00000508858 316 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 IGKV2-26-201ENST00000518305 343 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A1P02462 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A1P02462 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A1P02462 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A1P02462 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A1P02462 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A1P02462 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A1P02462 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A1P02462 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
COL4A1P02462 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
COL4A1P02462 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A1P02462 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A1P02462 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.32□□□□□ -1.72
COL4A1P02462 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A1P02462 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A1P02462 MIR93-201ENST00000385024 80 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A1P02462 ELOCP18-201ENST00000434209 337 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A1P02462 AC098824.1-201ENST00000453565 980 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 SEPT14P1-201ENST00000458703 648 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 RPL6P9-201ENST00000466502 859 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A1P02462 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A1P02462 RNA5SP154-201ENST00000516193 111 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 RNU1-103P-201ENST00000516502 125 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A1P02462 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A1P02462 KLKP1-201ENST00000595979 403 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 AL033523.1-201ENST00000605153 153 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 AL513477.2-201ENST00000607858 568 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 AL732618.1-201ENST00000623251 301 ntBASIC4.32□□□□□ -1.72
COL4A1P02462 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A1P02462 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A1P02462 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
COL4A1P02462 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A1P02462 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 MIR634-201ENST00000385208 97 ntBASIC4.31□□□□□ -1.72
COL4A1P02462 U3.39-201ENST00000408569 239 ntBASIC4.31□□□□□ -1.72
COL4A1P02462 LIPT1P1-201ENST00000415870 1186 ntBASIC4.31□□□□□ -1.72
COL4A1P02462 OR5AW1P-201ENST00000426334 1006 ntBASIC4.31□□□□□ -1.72
COL4A1P02462 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A1P02462 AL591363.1-201ENST00000450091 483 ntBASIC4.31□□□□□ -1.72
COL4A1P02462 RPS26P15-201ENST00000488067 348 ntBASIC4.31□□□□□ -1.72
COL4A1P02462 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.31□□□□□ -1.72
COL4A1P02462 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A1P02462 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL4A1P02462 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A1P02462 AC118273.1-201ENST00000525324 3006 ntBASIC4.31□□□□□ -1.72
COL4A1P02462 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.3□□□□□ -1.72
COL4A1P02462 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A1P02462 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.3□□□□□ -1.72
COL4A1P02462 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A1P02462 AC092435.3-201ENST00000565538 3654 ntBASIC4.3□□□□□ -1.72
COL4A1P02462 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL4A1P02462 AC234772.1-201ENST00000377927 937 ntBASIC4.3□□□□□ -1.72
COL4A1P02462 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A1P02462 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A1P02462 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A1P02462 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A1P02462 RN7SL809P-201ENST00000482040 297 ntBASIC4.3□□□□□ -1.72
COL4A1P02462 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A1P02462 AC008489.1-201ENST00000524271 483 ntBASIC4.3□□□□□ -1.72
COL4A1P02462 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A1P02462 MIR4325-201ENST00000583049 90 ntBASIC4.3□□□□□ -1.72
COL4A1P02462 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A1P02462 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.3□□□□□ -1.72
COL4A1P02462 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A1P02462 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL4A1P02462 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A1P02462 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A1P02462 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL4A1P02462 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A1P02462 MTHFD2P2-201ENST00000407725 247 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A1P02462 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A1P02462 RPS4XP2-201ENST00000458402 793 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A1P02462 AL049873.1-201ENST00000480540 376 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AC006445.1-201ENST00000491925 405 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 BTF3L4P4-201ENST00000506381 449 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.29□□□□□ -1.72
COL4A1P02462 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A1P02462 AC027281.1-201ENST00000574178 758 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A1P02462 AL139395.1-201ENST00000603662 160 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AC063952.1-203ENST00000634410 658 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A1P02462 BTBD10P1-201ENST00000549824 1352 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms