Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRAV27A0A087WT01 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRAV27A0A087WT01 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRAV27A0A087WT01 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 MIR423-201ENST00000362201 94 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AC068538.1-201ENST00000376856 336 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 MIR30B-201ENST00000384850 88 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 RPS27AP12-201ENST00000429552 465 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 VN1R105P-201ENST00000486595 910 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AC092851.1-201ENST00000535964 478 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 CYCSP30-201ENST00000546447 172 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 MIR4738-201ENST00000579134 87 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AC005344.1-201ENST00000613391 459 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AC016957.2-201ENST00000616998 848 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 ZYXP1-201ENST00000617638 118 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 CDRT1-208ENST00000630868 794 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 AL356489.2-201ENST00000566968 3528 ntBASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRAV27A0A087WT01 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AP004289.2-201ENST00000444413 1457 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 MFSD8-236ENST00000641509 4050 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 MIR3074-201ENST00000384885 81 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 RNU6-628P-201ENST00000410675 107 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 RHEBP3-201ENST00000411920 351 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 MTND2P15-201ENST00000418575 892 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AL139247.1-201ENST00000422768 325 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AL591419.1-201ENST00000427423 339 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 OR4F13P-201ENST00000428478 931 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 RPL7P28-201ENST00000437739 740 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 PPIAP17-201ENST00000438507 471 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC022034.3-201ENST00000471393 478 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AL139099.1-201ENST00000497398 403 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC027281.1-201ENST00000574178 758 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC115621.1-201ENST00000604653 858 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 OR6R2P-201ENST00000609216 300 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AL354798.1-201ENST00000622505 329 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 RNA5SP196-201ENST00000625967 102 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AL732372.2-225ENST00000642124 456 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 MAPK10-372ENST00000641954 3413 ntBASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRAV27A0A087WT01 PHKBP1-201ENST00000450951 1951 ntBASIC3.29□□□□□ -1.88
TRAV27A0A087WT01 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
TRAV27A0A087WT01 HSPA8P1-201ENST00000425843 1833 ntBASIC3.29□□□□□ -1.88
TRAV27A0A087WT01 BX005019.1-201ENST00000561881 1810 ntBASIC3.29□□□□□ -1.88
TRAV27A0A087WT01 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
TRAV27A0A087WT01 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
TRAV27A0A087WT01 RN7SKP44-201ENST00000363602 316 ntBASIC3.29□□□□□ -1.88
TRAV27A0A087WT01 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
TRAV27A0A087WT01 SNORA57.3-201ENST00000411095 141 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms