Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 MFSD8-216ENST00000641147 4009 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC090229.1-201ENST00000590983 1609 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 NEAT1-202ENST00000501122 22743 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC010300.1-201ENST00000600671 5134 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC107081.3-201ENST00000612715 2034 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC120338.1-201ENST00000625074 1541 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 RNU6-236P-201ENST00000363886 106 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 MIR620-201ENST00000385232 95 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 MTCO2P31-201ENST00000402702 684 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 VDAC1P9-201ENST00000412766 841 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 OR51A3P-201ENST00000413596 924 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 RPL21P108-201ENST00000413857 481 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 CYCSP10-201ENST00000417973 294 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC008065.1-201ENST00000428525 348 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 MTCYBP15-201ENST00000433123 1127 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 TDGF1P1-201ENST00000445734 527 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 AL162591.2-201ENST00000449634 317 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 RNU6-488P-201ENST00000515918 99 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 PTP4A1P6-201ENST00000531034 478 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC004217.3-201ENST00000551552 878 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 ATP5J2P6-201ENST00000565203 266 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC097504.2-201ENST00000608088 454 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 AF129408.1-201ENST00000608767 431 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC019193.2-201ENST00000610012 634 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 Z98755.1-201ENST00000407015 1384 ntBASIC4.74□□□□□ -1.65
VPS28Q9UK41 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS28Q9UK41 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS28Q9UK41 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AL627171.1-201ENST00000618845 1308 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS28Q9UK41 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS28Q9UK41 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS28Q9UK41 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 RNU1-20P-201ENST00000363314 162 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC004987.3-201ENST00000413879 771 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 CENPIP1-201ENST00000425713 902 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 DNAJC19P7-201ENST00000428811 344 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AL513175.1-201ENST00000431492 780 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 AK3P4-201ENST00000504283 583 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 SUMO2P5-201ENST00000506790 245 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 KRT19P6-201ENST00000510983 209 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC007016.1-201ENST00000512110 244 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS28Q9UK41 RNU6-202P-201ENST00000515998 96 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 SOD1P3-201ENST00000518682 454 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AC134698.5-201ENST00000519444 336 ntBASIC4.73□□□□□ -1.65
VPS28Q9UK41 AP001781.1-201ENST00000530977 207 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms