Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 SNORA62.1-201ENST00000364287 154 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 U3.52-201ENST00000384034 216 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 GCNT1P4-201ENST00000404096 329 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 Y_RNA.618-201ENST00000410949 107 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AL354890.1-201ENST00000413730 346 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 MTCYBP9-201ENST00000431021 303 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 NPM1P18-201ENST00000434232 732 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AF228730.2-201ENST00000438784 848 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RPL32P28-201ENST00000443577 397 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC022431.1-201ENST00000450941 438 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC091685.2-201ENST00000454924 864 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 BTF3P15-201ENST00000455606 336 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 Y_RNA.653-201ENST00000459091 95 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RNU7-66P-201ENST00000459469 62 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RNU6-1208P-201ENST00000459588 107 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AP001992.1-205ENST00000462248 379 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RN7SL160P-201ENST00000468558 284 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC093767.1-201ENST00000504523 156 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 SNX18P24-201ENST00000505249 671 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC104057.1-201ENST00000515547 497 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RNU2-10P-201ENST00000516375 211 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RNA5SP503-201ENST00000517047 117 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 IGKV3D-34-201ENST00000522638 302 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 COPS8P3-201ENST00000526024 482 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 SAA3P-201ENST00000533267 365 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC128657.1-201ENST00000549459 145 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 BICD1-206ENST00000551086 423 ntTSL 3 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC091133.5-201ENST00000603088 301 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AP000654.2-201ENST00000605633 586 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC090425.1-201ENST00000610007 140 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC245517.5-201ENST00000611529 162 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC096861.1-201ENST00000616652 240 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RMST_9.1-201ENST00000619945 193 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 MED6-212ENST00000615788 1700 ntTSL 5 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 ELL2P4-201ENST00000446870 1376 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 HSPD1P8-201ENST00000400121 1658 ntBASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
LIMD1Q9UGP4 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
LIMD1Q9UGP4 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.28
LIMD1Q9UGP4 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 TAB3P1-202ENST00000452645 1634 ntBASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 RNU6-1318P-201ENST00000365389 103 ntBASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 TANK-203ENST00000402568 878 ntTSL 5 BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 NUP35P1-201ENST00000422734 947 ntBASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 MTATP6P16-201ENST00000434543 526 ntBASIC7.02□□□□□ -1.29
LIMD1Q9UGP4 PRPS1P1-201ENST00000445305 876 ntBASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms