Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AL009179.1-201ENST00000406085 265 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AL023807.1-201ENST00000407932 359 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 RNU6-603P-201ENST00000411403 107 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 RAD23BP2-201ENST00000416003 1207 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC099336.2-201ENST00000422457 254 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 TMEM183AP1-205ENST00000432739 290 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 EEF1E1P1-201ENST00000446998 430 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 EEF1A1P1-201ENST00000447052 739 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AL596266.1-201ENST00000448132 400 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 PPIAP20-201ENST00000449839 135 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC099560.2-201ENST00000457554 255 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC091564.1-201ENST00000464563 479 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AL136038.1-201ENST00000497246 351 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 RN7SL466P-201ENST00000497546 295 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC010460.1-201ENST00000507087 466 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC093809.1-201ENST00000509155 340 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC106872.4-201ENST00000510050 523 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC091489.2-201ENST00000566263 604 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 MRPS21P7-201ENST00000566937 238 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC141257.3-201ENST00000572906 215 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 PRELID3BP8-201ENST00000604148 295 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AL589674.2-201ENST00000604304 337 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AP000894.4-201ENST00000610185 483 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC008498.1-201ENST00000613012 531 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC010266.2-201ENST00000564741 3255 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC093536.2-201ENST00000565257 1406 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 MAPK10-328ENST00000641553 4009 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 TEX21P-201ENST00000447107 1476 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 SNORA5.1-201ENST00000384275 131 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC136624.1-201ENST00000400791 413 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 HMGB1P17-201ENST00000403495 628 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 MTCYBP36-201ENST00000404146 440 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 VN1R8P-201ENST00000407739 893 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 MIR320C1-201ENST00000408566 88 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 RN7SKP33-201ENST00000410942 340 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC096921.1-201ENST00000411661 375 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AL513325.1-201ENST00000417716 1034 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 MTCYBP5-201ENST00000423752 1135 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AL121776.1-201ENST00000429337 372 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC023347.2-201ENST00000433994 462 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 RPL37P21-201ENST00000435890 276 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 CEACAMP9-201ENST00000442990 513 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 ARPC3P5-201ENST00000448802 534 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 PAXBP1P1-201ENST00000449315 447 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC239809.1-201ENST00000450470 217 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 RPS15AP17-201ENST00000470598 390 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC106872.3-201ENST00000495104 446 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 POU5F1P7-201ENST00000508759 541 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC011352.1-201ENST00000512300 793 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 RN7SKP298-201ENST00000515950 94 ntBASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC5.54□□□□□ -1.52
TRIM39Q9HCM9 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms