Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AC093849.1-201ENST00000563631 2209 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 U3.44-201ENST00000458938 192 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 RN7SL432P-201ENST00000484057 298 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AC095038.2-201ENST00000621464 1070 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AL137790.1-201ENST00000634283 177 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 HSPD1P11-201ENST00000508643 1702 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AC109925.1-201ENST00000478069 331 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 LARP7P3-201ENST00000579888 337 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AC015922.4-201ENST00000612568 690 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AP000553.6-201ENST00000641242 118 ntBASIC3.49□□□□□ -1.85
VPS13AQ96RL7 AC005831.1-201ENST00000624384 1697 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 HIGD1AP4-201ENST00000430194 280 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 RAB28P3-201ENST00000448325 597 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 DPPA3P2-201ENST00000553589 478 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 AC067852.3-201ENST00000589177 561 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 PHACTR2P1-201ENST00000605639 1414 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 AF117829.1-206ENST00000621883 3802 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 AC006504.1-201ENST00000562493 3666 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 AC020656.2-201ENST00000613291 5309 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 RPL32P28-201ENST00000443577 397 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 RN7SKP132-201ENST00000516001 208 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 MIR7702-201ENST00000621931 59 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 A2MP1-204ENST00000566278 4130 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 BCORP1-203ENST00000513194 5093 ntBASIC3.48□□□□□ -1.85
VPS13AQ96RL7 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
VPS13AQ96RL7 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC007685.1-201ENST00000329806 452 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC108938.1-201ENST00000451204 136 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 RPS20P32-201ENST00000456044 356 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 RPL31P61-201ENST00000496160 376 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 MIR4472-2-201ENST00000582069 67 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 SKP1P3-201ENST00000429280 487 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 RPL7P38-201ENST00000488396 739 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 HIGD1AP3-201ENST00000515857 278 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 IGKV2-26-201ENST00000518305 343 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 MIR4319-201ENST00000577285 85 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC073657.2-201ENST00000605661 303 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 SNORA62.6-201ENST00000606322 83 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AL138885.1-201ENST00000405921 675 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 RN7SKP222-201ENST00000410651 315 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC073335.1-201ENST00000427776 363 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS13AQ96RL7 OR2A20P-203ENST00000498397 1268 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 AC097505.1-201ENST00000610199 565 ntBASIC3.47□□□□□ -1.85
VPS13AQ96RL7 FTX-210ENST00000603037 8347 ntTSL 5 BASIC3.46□□□□□ -1.85
VPS13AQ96RL7 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
VPS13AQ96RL7 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 RNU6-304P-201ENST00000364855 107 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 RN7SKP53-201ENST00000411337 315 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC108734.1-201ENST00000439549 399 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms