Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC069545.1-201ENST00000605671 358 ntBASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 AL353600.1-201ENST00000608148 251 ntBASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 AC234782.5-201ENST00000617723 324 ntBASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 AL049737.1-201ENST00000413920 1403 ntBASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CHMP4CQ96CF2 USP9YP4-201ENST00000424401 1745 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 Z99496.1-201ENST00000469424 1477 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 RNU6-619P-201ENST00000365146 108 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 RNY3P9-201ENST00000384727 106 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AL133270.1-201ENST00000402635 279 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 TBCAP2-201ENST00000416175 326 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 MTCO1P54-201ENST00000430139 712 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC093414.1-201ENST00000434712 514 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC234781.3-201ENST00000452540 973 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC093755.1-201ENST00000512950 1023 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 RNA5SP228-201ENST00000516232 133 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC005868.1-201ENST00000536421 331 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 CYCSP40-201ENST00000575927 294 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 SNORA74C-1-201ENST00000580726 201 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC010200.2-201ENST00000605098 235 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC092954.1-201ENST00000609121 445 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC105227.2-201ENST00000615075 605 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 uc_338.18-201ENST00000615451 175 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC015804.1-201ENST00000622935 435 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC068057.2-201ENST00000624047 895 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AC090017.1-201ENST00000548612 1779 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AL022393.1-201ENST00000625142 1677 ntBASIC5.79□□□□□ -1.48
CHMP4CQ96CF2 AL672167.1-204ENST00000641875 3017 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC009229.4-201ENST00000623854 1947 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AL450992.3-201ENST00000413192 568 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC107081.1-201ENST00000414975 361 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 PAICSP7-201ENST00000419829 962 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 USP9YP22-201ENST00000438971 294 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC004865.1-201ENST00000442276 1003 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 VN1R40P-201ENST00000455196 941 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 RNA5SP103-201ENST00000459503 118 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 RN7SL809P-201ENST00000482040 297 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 MTND2P14-201ENST00000482139 351 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC048346.1-201ENST00000510247 144 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC005351.1-201ENST00000511152 786 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 RPL7L1P13-201ENST00000511702 739 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 FABP5P12-201ENST00000515543 389 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 RNA5SP464-201ENST00000516251 108 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 RNA5SP360-201ENST00000516555 118 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AP001880.2-201ENST00000538233 448 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC126323.6-202ENST00000568092 3511 ntBASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP4CQ96CF2 AC021171.1-201ENST00000603137 706 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms