Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 RPL30P3-201ENST00000424262 333 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC073264.2-201ENST00000448886 166 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 MTND2P28-201ENST00000457540 1044 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 RNA5SP246-201ENST00000458909 119 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 RPL7P48-201ENST00000461513 746 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 SUMO1P1-201ENST00000497904 306 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC004069.2-201ENST00000505438 1114 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 HMGB1P46-201ENST00000520062 610 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC141257.3-201ENST00000572906 215 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 MIR5684-201ENST00000585074 65 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC093765.1-201ENST00000603758 881 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC110741.2-201ENST00000605278 268 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC011472.4-201ENST00000615848 491 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC007342.8-201ENST00000623278 678 ntBASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NUDCD3Q8IVD9 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.96□□□□□ -1.77
NUDCD3Q8IVD9 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.77
NUDCD3Q8IVD9 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AC006504.1-201ENST00000562493 3666 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 RANP4-201ENST00000413361 655 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 RPS12P23-201ENST00000419579 400 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 RPS29P17-201ENST00000430795 166 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 PPIAP17-201ENST00000438507 471 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AC010307.1-201ENST00000467206 836 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AC018635.1-201ENST00000468292 1030 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AC107398.1-201ENST00000486904 505 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 RPL7P24-201ENST00000493052 752 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 FTH1P9-201ENST00000513251 355 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AL161713.1-201ENST00000555538 145 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AC083899.3-201ENST00000603413 594 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AC090525.3-201ENST00000605601 189 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AC055764.2-201ENST00000610089 670 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 AL136964.1-201ENST00000622038 2990 ntBASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
NUDCD3Q8IVD9 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 DDX6P1-205ENST00000441966 1436 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 MTCO1P14-201ENST00000441695 1559 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC095050.2-201ENST00000510748 1458 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 SNORA60-201ENST00000362396 134 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 RNU4-39P-201ENST00000362455 127 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 RNU1-18P-201ENST00000363062 164 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 RNU6-40P-201ENST00000384254 107 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AL590623.1-201ENST00000427864 105 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 TRIM60P13-201ENST00000432350 1283 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 HMGB1P37-201ENST00000439613 609 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC092809.1-201ENST00000441469 474 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 HMGB1P5-202ENST00000451497 985 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 HMGB1P26-201ENST00000452520 628 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 RPL5P32-201ENST00000454085 879 ntBASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC3.95□□□□□ -1.78
NUDCD3Q8IVD9 MTCO1P31-201ENST00000506355 492 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms