Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RN7SL853P-201ENST00000617250 223 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A4P53420 AC009452.1-201ENST00000640823 606 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 IPO8P1-201ENST00000455509 3109 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A4P53420 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.03□□□□□ -1.76
COL4A4P53420 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
COL4A4P53420 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
COL4A4P53420 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
COL4A4P53420 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.03□□□□□ -1.76
COL4A4P53420 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
COL4A4P53420 RNA5SP39-201ENST00000411245 120 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 OR51A6P-201ENST00000418680 1004 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 ELOCP6-201ENST00000429066 328 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AC005326.1-201ENST00000429197 123 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A4P53420 KATNBL1P2-201ENST00000433311 835 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A4P53420 RPL37P3-201ENST00000456825 293 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 ELOCP12-201ENST00000458706 328 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
COL4A4P53420 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A4P53420 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A4P53420 HIGD1AP18-201ENST00000520730 278 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AC009303.3-201ENST00000591103 736 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AC010680.3-201ENST00000604215 520 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AC115621.1-201ENST00000604653 858 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 LSM1P2-201ENST00000604911 322 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A4P53420 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.77
COL4A4P53420 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.02□□□□□ -1.77
COL4A4P53420 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.02□□□□□ -1.77
COL4A4P53420 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
COL4A4P53420 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A4P53420 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL4A4P53420 AP000568.1-201ENST00000282964 442 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 RNA5SP104-201ENST00000410989 118 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A4P53420 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.02□□□□□ -1.77
COL4A4P53420 RPL7P28-201ENST00000437739 740 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 RSL24D1P2-201ENST00000445584 366 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 UBDP1-202ENST00000457888 382 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.02□□□□□ -1.77
COL4A4P53420 AC010342.1-201ENST00000514047 877 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 RNA5SP208-201ENST00000516156 78 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.02□□□□□ -1.77
COL4A4P53420 AP001284.1-201ENST00000528393 2118 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 AC090877.1-201ENST00000561418 344 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A4P53420 MIR4325-201ENST00000583049 90 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.02□□□□□ -1.77
COL4A4P53420 AC026368.1-201ENST00000614934 690 ntBASIC4.02□□□□□ -1.77
COL4A4P53420 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL4A4P53420 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A4P53420 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A4P53420 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.02□□□□□ -1.77
COL4A4P53420 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
COL4A4P53420 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A4P53420 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A4P53420 RNA5SP50-201ENST00000363731 107 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 HSFY4P-201ENST00000415994 1181 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A4P53420 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A4P53420 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A4P53420 EIF4A1P11-201ENST00000451239 222 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A4P53420 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A4P53420 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A4P53420 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A4P53420 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A4P53420 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A4P53420 RNA5SP164-201ENST00000516533 110 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 AC008011.1-201ENST00000545989 227 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 AC128687.2-201ENST00000609657 566 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 AL354976.1-201ENST00000613843 387 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 AL591424.2-201ENST00000617023 128 ntBASIC4.01□□□□□ -1.77
COL4A4P53420 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A4P53420 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A4P53420 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms