Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL807761.1-201ENST00000417622 171 ntBASIC4.97□□□□□ -1.61
BDNFP23560 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC4.97□□□□□ -1.61
BDNFP23560 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.97□□□□□ -1.61
BDNFP23560 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.97□□□□□ -1.61
BDNFP23560 NAP1L1P3-201ENST00000462291 880 ntBASIC4.97□□□□□ -1.61
BDNFP23560 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
BDNFP23560 HIGD1AP3-201ENST00000515857 278 ntBASIC4.97□□□□□ -1.61
BDNFP23560 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.97□□□□□ -1.61
BDNFP23560 AP001207.1-201ENST00000524051 481 ntBASIC4.97□□□□□ -1.61
BDNFP23560 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.97□□□□□ -1.61
BDNFP23560 AC105129.1-201ENST00000560250 297 ntBASIC4.97□□□□□ -1.61
BDNFP23560 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.97□□□□□ -1.61
BDNFP23560 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
BDNFP23560 VN1R79P-201ENST00000593540 513 ntBASIC4.97□□□□□ -1.61
BDNFP23560 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.97□□□□□ -1.61
BDNFP23560 IGHV3-29-201ENST00000604817 344 ntBASIC4.97□□□□□ -1.61
BDNFP23560 AP000255.1-201ENST00000610276 676 ntBASIC4.97□□□□□ -1.61
BDNFP23560 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.97□□□□□ -1.61
BDNFP23560 AC004232.3-201ENST00000622977 525 ntBASIC4.97□□□□□ -1.61
BDNFP23560 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.97□□□□□ -1.61
BDNFP23560 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
BDNFP23560 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.97□□□□□ -1.61
BDNFP23560 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
BDNFP23560 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.96□□□□□ -1.61
BDNFP23560 AC008079.2-201ENST00000623543 20396 ntBASIC4.96□□□□□ -1.61
BDNFP23560 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.61
BDNFP23560 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.96□□□□□ -1.61
BDNFP23560 A2MP1-204ENST00000566278 4130 ntBASIC4.96□□□□□ -1.62
BDNFP23560 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.96□□□□□ -1.62
BDNFP23560 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
BDNFP23560 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
BDNFP23560 AL121972.1-201ENST00000402023 252 ntBASIC4.96□□□□□ -1.62
BDNFP23560 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.96□□□□□ -1.62
BDNFP23560 EIF4HP2-201ENST00000424380 563 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.96□□□□□ -1.62
BDNFP23560 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.96□□□□□ -1.62
BDNFP23560 AC004938.1-201ENST00000438468 308 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AC108463.1-201ENST00000450258 347 ntBASIC4.96□□□□□ -1.62
BDNFP23560 RPL5P32-201ENST00000454085 879 ntBASIC4.96□□□□□ -1.62
BDNFP23560 RPS20P32-201ENST00000456044 356 ntBASIC4.96□□□□□ -1.62
BDNFP23560 RPL7P32-201ENST00000457119 744 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AC022795.1-201ENST00000473808 480 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AC020593.1-201ENST00000507399 299 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AC111000.3-201ENST00000508057 576 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AC118282.2-201ENST00000508739 374 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AC106806.2-201ENST00000509365 500 ntBASIC4.96□□□□□ -1.62
BDNFP23560 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.96□□□□□ -1.62
BDNFP23560 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.96□□□□□ -1.62
BDNFP23560 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.96□□□□□ -1.62
BDNFP23560 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.96□□□□□ -1.62
BDNFP23560 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.96□□□□□ -1.62
BDNFP23560 NIFKP8-201ENST00000560500 874 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AGGF1P6-201ENST00000569213 976 ntBASIC4.96□□□□□ -1.62
BDNFP23560 AL158211.2-201ENST00000607282 395 ntBASIC4.96□□□□□ -1.62
BDNFP23560 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
BDNFP23560 VN1R74P-201ENST00000613259 503 ntBASIC4.96□□□□□ -1.62
BDNFP23560 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
BDNFP23560 DBF4P1-201ENST00000412976 1892 ntBASIC4.96□□□□□ -1.62
BDNFP23560 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.96□□□□□ -1.62
BDNFP23560 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
BDNFP23560 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
BDNFP23560 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.95□□□□□ -1.62
BDNFP23560 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.95□□□□□ -1.62
BDNFP23560 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
BDNFP23560 OR4K15-201ENST00000305051 1216 ntBASIC4.95□□□□□ -1.62
BDNFP23560 AC008549.2-201ENST00000333482 706 ntBASIC4.95□□□□□ -1.62
BDNFP23560 RNU1-85P-201ENST00000364127 164 ntBASIC4.95□□□□□ -1.62
BDNFP23560 SNORD113.2-201ENST00000364166 89 ntBASIC4.95□□□□□ -1.62
BDNFP23560 RNA5SP189-201ENST00000364920 115 ntBASIC4.95□□□□□ -1.62
BDNFP23560 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
BDNFP23560 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
BDNFP23560 AL121978.1-201ENST00000402778 359 ntBASIC4.95□□□□□ -1.62
BDNFP23560 U3.35-201ENST00000408405 208 ntBASIC4.95□□□□□ -1.62
BDNFP23560 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.95□□□□□ -1.62
BDNFP23560 LIPT1P1-201ENST00000415870 1186 ntBASIC4.95□□□□□ -1.62
BDNFP23560 TMBIM7P-201ENST00000418074 855 ntBASIC4.95□□□□□ -1.62
BDNFP23560 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.95□□□□□ -1.62
BDNFP23560 B3GNT2P1-201ENST00000434960 952 ntBASIC4.95□□□□□ -1.62
BDNFP23560 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.95□□□□□ -1.62
BDNFP23560 RAB11AP1-201ENST00000442978 646 ntBASIC4.95□□□□□ -1.62
BDNFP23560 HMGN2P21-201ENST00000447764 270 ntBASIC4.95□□□□□ -1.62
BDNFP23560 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.95□□□□□ -1.62
BDNFP23560 AC092045.1-201ENST00000495716 1231 ntBASIC4.95□□□□□ -1.62
BDNFP23560 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.95□□□□□ -1.62
BDNFP23560 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.95□□□□□ -1.62
BDNFP23560 RN7SKP92-201ENST00000517266 244 ntBASIC4.95□□□□□ -1.62
BDNFP23560 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
BDNFP23560 HIGD1AP5-201ENST00000529959 259 ntBASIC4.95□□□□□ -1.62
BDNFP23560 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.95□□□□□ -1.62
BDNFP23560 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.95□□□□□ -1.62
BDNFP23560 AC068790.4-201ENST00000602474 263 ntBASIC4.95□□□□□ -1.62
BDNFP23560 AC133794.1-201ENST00000602731 914 ntBASIC4.95□□□□□ -1.62
BDNFP23560 AC068722.2-201ENST00000618734 544 ntBASIC4.95□□□□□ -1.62
BDNFP23560 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.95□□□□□ -1.62
BDNFP23560 AC006249.1-201ENST00000621223 471 ntBASIC4.95□□□□□ -1.62
BDNFP23560 AC068880.4-201ENST00000623082 495 ntBASIC4.95□□□□□ -1.62
BDNFP23560 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.95□□□□□ -1.62
BDNFP23560 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.95□□□□□ -1.62
BDNFP23560 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
BDNFP23560 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms