Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 SNORD66.1-201ENST00000391230 76 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 HSPE1P12-201ENST00000412576 301 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 RPS26P40-201ENST00000435209 294 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 RPL36AP13-201ENST00000457490 317 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC092691.2-201ENST00000461787 803 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 RPL29P14-201ENST00000495837 428 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AL139099.1-201ENST00000497398 403 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC108145.1-201ENST00000503770 153 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC098799.1-201ENST00000504752 800 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC017037.1-201ENST00000508460 471 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC109458.1-201ENST00000508858 316 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 RN7SKP141-201ENST00000516167 338 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 RNA5SP143-201ENST00000516936 115 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 AL645927.2-201ENST00000618350 349 ntBASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
TMX2-CTNND1H3BSU7 PHKBP1-201ENST00000450951 1951 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 DHFRP5-201ENST00000406944 564 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 RNA5SP44-201ENST00000410446 133 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 MTND4LP21-201ENST00000415303 295 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 RWDD4P2-201ENST00000426392 563 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 AL035246.1-201ENST00000433554 1255 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 TPTE2P3-201ENST00000441562 1189 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 OR6C72P-201ENST00000451403 892 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 RWDD4P1-201ENST00000488019 565 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 RFPL4AP3-201ENST00000515267 345 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 OR7E10P-201ENST00000526420 991 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC091516.1-201ENST00000549191 703 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 AL592436.1-201ENST00000605135 558 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 AL354798.1-201ENST00000622505 329 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 CR392039.5-201ENST00000623201 510 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 CUL4AP1-201ENST00000514750 1863 ntBASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TMX2-CTNND1H3BSU7 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 RNU6-670P-201ENST00000364312 104 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 Z98941.1-201ENST00000407764 100 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 SNORA57.3-201ENST00000411095 141 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 TRIM60P17-201ENST00000415181 719 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 OR5BE1P-201ENST00000425977 939 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 HMGB3P10-201ENST00000434734 572 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 AL353597.2-202ENST00000434901 373 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 APOOP2-201ENST00000461561 539 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 GAPDHP36-201ENST00000480688 918 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 RNU6-362P-201ENST00000516736 90 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 CYCSP30-201ENST00000546447 172 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC063950.1-201ENST00000552036 308 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 MIR7151-201ENST00000617477 60 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 MIR7702-201ENST00000621931 59 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 AP005264.7-201ENST00000625003 745 ntBASIC3.93□□□□□ -1.78
TMX2-CTNND1H3BSU7 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms